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Report for CCDS52435.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52435.1 Public Mus musculus 7 Or13a28 23 108 98 CCDS HistoryNCBI Gene:18362Re-query CCDS DB by CCDS ID:52435.1Re-query CCDS DB by GeneID:18362See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52435.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084455.3 ENSMUSP00000081493.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084455.3Link to Ensembl Protein Viewer:ENSMUSP00000081493.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000084455Re-query CCDS DB by Protein ID:ENSMUSP00000081493
Original member Current member EBI ENSMUST00000210241.3 ENSMUSP00000147819.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210241.3Link to Ensembl Protein Viewer:ENSMUSP00000147819.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000210241Re-query CCDS DB by Protein ID:ENSMUSP00000147819
Original member Current member EBI ENSMUST00000211685.1 ENSMUSP00000147924.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211685.1Link to Ensembl Protein Viewer:ENSMUSP00000147924.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211685Re-query CCDS DB by Protein ID:ENSMUSP00000147924
Original member Current member NCBI NM_146964.1 NP_667175.1 Accepted alive Link to Nucleotide Sequence:NM_146964.1Link to Protein Sequence:NP_667175.1Re-query CCDS DB by Nucleotide ID:NM_146964Re-query CCDS DB by Protein ID:NP_667175Link to BLAST:NP_667175.1

Chromosomal Locations for CCDS 52435.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140637703 140638638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGATGTTCAGTCCCAACCAGACAGAAGTGACAGAGTTTATACTAGAAGGGTTTTCAGAACATGCTACTC
TAAGACTTCTCCTGACAGGCTGCTTCCTGTCCCTCTACACAATCGCTCTAATGGGCAACATTGTTATCAT
TGCTTTGGTCACCTCCAGCACTGGGCTCCACAGTCCCATGTACTTTTTCCTGTGCAACCTGGCCACCATG
GACATTGTGTGCACCTCCTCTGTGATTCCTAAGGCCCTGATTGGCCTAGTGTCTGAAGAAAACACCATCT
CCTTCAAAGGATGCATGGCTCAGCTCTTCTTTCTTCTGTGGTCCTTGTCTTCGGAGCTGCTGCTGCTCAC
GGTCATGGCCTATGACCGCTATGTGGCCATCTGCTTTCCCCTGCACTACAGCTCTAGAATGAGCCCACAG
CTCTGTGGGGCCCTGGCCGTGGGTGTATGGTCCATCTGTGCTGTGAATGCATCTGTGCACACTGGCCTGA
TGACACGGCTGTCATTCTGTGGCCCCAAGGTCATCACCCACTTCTTCTGTGAGATTCCCCCACTCCTCCT
GCTTTCCTGTAGTCCCACATACATTAATAGCGTTATGACACTTGTGGCAGATGCCTTTTATGGGTGCATC
AACTTTGTGCTAACCTTGTTATCCTATGGCTGCATCATTGCCAGTGTTCTGCGCATGCGTTCTGCTGAGG
GCAAGAGGAAGGCCTTTTCTACCTGTTCATCCCACCTCATCGTGGTCTCAGTGTACTACTCATCTGTGTT
CTGTGCCTATGTCAGTCCTGCCTCCAGCTACAGCCCAGAAAGAAGCAAAGTTACCTCCGTGCTGTACTCG
ATCCTCAGCCCAACCCTGAACCCCCTCATCTATACACTAAGGAACAAGGATGTCAAACTCGCCCTGGGAA
GACTCTTGCCCTTTTTCCCCAAGTAG

Translation (311 aa):
MMFSPNQTEVTEFILEGFSEHATLRLLLTGCFLSLYTIALMGNIVIIALVTSSTGLHSPMYFFLCNLATM
DIVCTSSVIPKALIGLVSEENTISFKGCMAQLFFLLWSLSSELLLLTVMAYDRYVAICFPLHYSSRMSPQ
LCGALAVGVWSICAVNASVHTGLMTRLSFCGPKVITHFFCEIPPLLLLSCSPTYINSVMTLVADAFYGCI
NFVLTLLSYGCIIASVLRMRSAEGKRKAFSTCSSHLIVVSVYYSSVFCAYVSPASSYSPERSKVTSVLYS
ILSPTLNPLIYTLRNKDVKLALGRLLPFFPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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