NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52498.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52498.1 Public Mus musculus 8 Potefam3e 23 108 98 CCDS HistoryNCBI Gene:626415Re-query CCDS DB by CCDS ID:52498.1Re-query CCDS DB by GeneID:626415See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52498.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098909.4 ENSMUSP00000096508.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098909.4Link to Ensembl Protein Viewer:ENSMUSP00000096508.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098909Re-query CCDS DB by Protein ID:ENSMUSP00000096508
Original member Current member NCBI NM_001039553.2 NP_001034642.2 Accepted alive Link to Nucleotide Sequence:NM_001039553.2Link to Protein Sequence:NP_001034642.2Re-query CCDS DB by Nucleotide ID:NM_001039553Re-query CCDS DB by Protein ID:NP_001034642Link to BLAST:NP_001034642.2

Chromosomal Locations for CCDS 52498.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 19729746 19730002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19732706 19732820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19733648 19733821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19734698 19734780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19735703 19735861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19736581 19736633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19747761 19747797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19749416 19749477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19751632 19751665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19752158 19752236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGGAGGAAGAAATCAACTATGATTCCCAGACAATGAACATCCCCAGAAGGAGACGCTGGTACACTCACC
TGTGGCGTTCATGTCTGGGTCTTAGATGCATGCATCCTCAGAAAAAGAAGAAATATCCCCTCTACTTGAT
TGGCTATGATCCTATAGGCCCATTACAACGAGCGGCCAGCGTGGGTGACCTTGATACAACAGAGAAGTTA
ATCCACTCCAGTCAACATCATGTGGATGAATCTGATAGGAGGAAAAGGACTTCGCTGCATTATGCATGTG
CCCACAACCATCCAGACGTGGTGACACTATTATTAGAAAATAATTCCAGCATTAACATCCGGGATGATGA
AGGCTGCACACCCTTGATTAAGGCCACCCAACGAGACAATGTGGATTGTGCTTCCGTATTGCTCACCCAC
AATGCGGATCCAAATCTGATAGATTCCAGTGGGAACACAGCCTTCCACCATGCTATATCCAGGGGTAACA
TAAGGATTGTAAAAATGCTCCTTGAGCACAACGTAGACATTGAAGCCAAAACAGAGTATGGCTTGACACC
ATTGCAACTTGCAACATTTGAACAGAAACCTGAAATGGTAGAATTTTTAGCAGCAAAGTGTGCAAAAAGC
TCAGTGACCCCCTCCTGGTCACCCAGTCCCACAGTCTCTCCCTGCCCCTCCTCCACTTCACCTCTGAGCA
GTTTGGGACTCCCTGTATGTCCAAACCCTGGCACTTCGTCTCTCTCTGAGGACAGAAAAAGTAGCTCAGC
TAGAAGAATAAAACTGAGTACTGGATCGTCAGCTCAGAGAACTGAAGTGAAGCATGTCAGGTTCAATGAA
GAAATCTTATACTTTAAAGAGGAAAGGCCTTTATCCTGTGAAGCAAGACCACCCGGACAGCTTAAATCTA
TCTTGAAAAACACTGTCCAGTATAATACAGTTAATGAGAAAATTACAAGAAGAACATCACTGTGGTGTTC
AAAAGCAGAAGATGTCAGGTATACTTCCTGTATCAAGGTAAAATGCTTCTCTGTGAAATCGAGTTTCTTA
TGA

Translation (350 aa):
MEEEINYDSQTMNIPRRRRWYTHLWRSCLGLRCMHPQKKKKYPLYLIGYDPIGPLQRAASVGDLDTTEKL
IHSSQHHVDESDRRKRTSLHYACAHNHPDVVTLLLENNSSINIRDDEGCTPLIKATQRDNVDCASVLLTH
NADPNLIDSSGNTAFHHAISRGNIRIVKMLLEHNVDIEAKTEYGLTPLQLATFEQKPEMVEFLAAKCAKS
SVTPSWSPSPTVSPCPSSTSPLSSLGLPVCPNPGTSSLSEDRKSSSARRIKLSTGSSAQRTEVKHVRFNE
EILYFKEERPLSCEARPPGQLKSILKNTVQYNTVNEKITRRTSLWCSKAEDVRYTSCIKVKCFSVKSSFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH