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Report for CCDS52509.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52509.1 Public Mus musculus 8 Defa32 23 108 98 CCDS HistoryNCBI Gene:100041890Re-query CCDS DB by CCDS ID:52509.1Re-query CCDS DB by GeneID:100041890See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52509.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084041.3 ENSMUSP00000081054.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084041.3Link to Ensembl Protein Viewer:ENSMUSP00000081054.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000084041Re-query CCDS DB by Protein ID:ENSMUSP00000081054
Original member Current member NCBI NM_001177521.1 NP_001170992.1 Accepted alive Link to Nucleotide Sequence:NM_001177521.1Link to Protein Sequence:NP_001170992.1Re-query CCDS DB by Nucleotide ID:NM_001177521Re-query CCDS DB by Protein ID:NP_001170992Link to BLAST:NP_001170992.1

Chromosomal Locations for CCDS 52509.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 21529075 21529246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21529803 21529918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (288 nt):
ATGAAGACACTTGTCCTCCTCTCTGCCCTCGTCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAA
ACACAGATGAGGAGACTAATACTGAGGAGCAGCCAGGGGAGGAGGACCAGGCTGTGTCTGTCTCCTTTGG
AGACCCAGAAGGATCTGCTCTTCATGAAAAATCGTCGAGAGATCTGATATGCTATTGTAGAAAAGGAGGC
TGCAATAGAGGAGAACAAGTTTATGGGACCTGCTCAGGACGACTTTTGTTCTGCTGCCGCCGCCGCCACC
GCCACTGA

Translation (95 aa):
MKTLVLLSALVLLAFQVQADPIQNTDEETNTEEQPGEEDQAVSVSFGDPEGSALHEKSSRDLICYCRKGG
CNRGEQVYGTCSGRLLFCCRRRHRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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