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Report for CCDS52528.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52528.1 Public Mus musculus 8 Nsd3 23 108 98 CCDS HistoryNCBI Gene:234135Re-query CCDS DB by CCDS ID:52528.1Re-query CCDS DB by GeneID:234135See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 52528.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084026.11 ENSMUSP00000081040.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084026.11Link to Ensembl Protein Viewer:ENSMUSP00000081040.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000084026Re-query CCDS DB by Protein ID:ENSMUSP00000081040
Original member Current member EBI ENSMUST00000142395.7 ENSMUSP00000117778.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000142395.7Link to Ensembl Protein Viewer:ENSMUSP00000117778.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000142395Re-query CCDS DB by Protein ID:ENSMUSP00000117778
Original member Current member NCBI NM_001081269.2 NP_001074738.1 Accepted alive Link to Nucleotide Sequence:NM_001081269.2Link to Protein Sequence:NP_001074738.1Re-query CCDS DB by Nucleotide ID:NM_001081269Re-query CCDS DB by Protein ID:NP_001074738Link to BLAST:NP_001074738.1

Chromosomal Locations for CCDS 52528.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 25640621 25641325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25648441 25648512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25649541 25649703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25659741 25659895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25662741 25663256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25666030 25666156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25673334 25673434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25675697 25675742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25678716 25678846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25679866 25679994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25680648 25680774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25682499 25682696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25683152 25683322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25691015 25691161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25694689 25694845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25698733 25698935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25699911 25700023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25700451 25700720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25706524 25706640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25709063 25709204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25710673 25710779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25713358 25713559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25714159 25714400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4341 nt):
ATGGATTTCTCTTTCTCTTTCATGCAAGGGATCATGGGAAACACAATTCAGCAACCACCTCAACTCATTG
ACTCGGCCAACATCCGCCAGGAGGATGCCTTTGATAACCACAGTGACATTGTTGAAGATGGTGGCCCGAC
ACCCTTTGAAGCTACTTTGCAACAAGGTTTTCAATATCCACCTACAACAGAAGACCTTCCTCCGCTCACA
AATGGCTACCCACCATCAATCAGCTTGTATGAAACTCAAACCAAATACCCGCCATATAATCAGTATCCCA
ATGGGTCAGCCAACGGTTTTGGTGCAGTTAGAAACTTTAGCCCTACTGACTATTACCATTCAGAAATTCC
AAACACAAGACCACATGAAATTCTGGAAAAACCTTCTCCTCCTCAGCCACCTCCTCTTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTTCGGTACCACAAACTGTGATTCCAAAGAAGACAGGCTCACCCGAGATTA
AACTAAAAATAACCAAAACTATCCAGAATGGCAGGGAATTGTTTGAGTCTTCCCTTTGTGGAGACCTCTT
AAATGAAGTACAGGCAAGCGAGCACACAAAGTCTAAGCATGAAAGCAGAAAGGAAAAGAGGAAAAAGAGC
AACAGACACGAGTCATCTCGATCCGAAGAGCGGAGGTCACACAAGATTCCCAAGCTAGAGCCGGAGGGAC
AGAATAGACCAAATGAGAGGGTGGACACTGCACCAGAGAAGCCAAGAGAAGAGCCAGTGCTCAAAGAGGC
CATCCCGGTTCAGCCAATACTGTCTTCTGTTCCAACAACAGAAACATCCACTGGTGTTAAGTTCCAGGTT
GGTGATCTTGTTTGGTCCAAGGTGGGAACCTACCCTTGGTGGCCTTGTATGGTTTCAAGTGATCCCCAGC
TTGAGGTCCATTCCAAAATTAACACAAGAGGTGCCCGGGAATATCATGTCCAATTTTTTAGCAACCAGCC
AGAGAGGGCATGGGTTCATGAGAAACGGGTACGGGAATACAAAGGTCATGAACAGTATGAAGAGTTACTA
GCCGAGGCAGCCAAGCAAGCCAGCAATCATTCTGAAAAGCAAAAGATTCGGAAACCCCGACCTCAGAGAG
AACGTGCCCAATGGGACATTGGCATTGCTCATGCAGAGAAAGCATTGAAAATGACTCGGGAGGAAAGAGT
AGAGCAGTACACTTTCATCTACATTGATAAGCAGCCAGAAGAGGCTTCGTCCCAAGCAAAGAAGAATGTT
ACCTCTAAGACGGAAGTCAAGAAACCCCGAAGACCAAGATCTGTGCTGAACAGTCAGCCAGAACAGACCA
ATGCTGGGGAGGTGGCCTCCTCACAATCAAGTACTGACCTTCGAAGGCAGAGCCAGAGGCGGCATACTAG
CTTGGAAGAGGAAGAGCCACCTCCTGTTAAAATCGCCTGGAAAACAGCAGCCGCAAGGAAGTCCTTACCA
GCCTCCATCACAATGCACAAAGGGAGCCTAGATTTGCAGAAGTGTAATATGTCTCCAGTTGTGAAAATTG
AACAAGTGTTTGCTCTCCAGAATGCAACAGGAGATGGGAAGTTTATTGATCAGTTTGTTTATTCAACGAA
GGGTATTGGTAACAAAACAGAAATAAGTGTCAGGGGGCAAGACAGGCTTATAATCTCTTCACCAAGTCAG
AGAAGTGAAAAGCCGGCTCAGAGCGCGTCATCTCCGGAGGCAACATCTGGTTCTGCAGGCCCAGTAGAGA
AGAAGCAGCAGAGAAGATCCATCAGGACTCGATCTGAGTCAGAGAAGTCCGCCGAGGTTGTGCCAAAGAA
GAAGATCAAAAAGGAGCAGGTTGAGACAGCTCCCCAGGCCTCCCTGAAGACCGGGTTACAGAAAGGTGCC
AGCGAGATTTCAGATTCCTGTAAGCCCCTAAAGAAAAGGAGTCGCGCCTCAACGGATGTAGAGACGGCTA
GTTGCACGTACAGAGACACATCTGACTCCGATTCTAGAGGACTGAGTGACGGGCAGGTAGGCTTTGGCAA
ACAAGTAGATAGCCCGTCAGCTACTGCTGACGCAGATGCTTCTGACGCGCAGTCGGTGGACTCGAGTCTG
TCACGGAGAGGTGTCGGCACGAGTAAGAAGGACACTGTGTGTCAGGTCTGTGAGAAGGCTGGCGACTGCC
TTGTTGCTTGTGAGGGGGAGTGCTGCCGACACTTTCACGTGGAGTGCTTGGGACTGACTGCAGTCCCTGA
GGGCCACTTCACCTGTGAGGAGTGTGAGACTGGACAGCACCCATGTTTTTCATGTAAAGTGTCTGGTAAG
GATGTGAAACGTTGTTCTGTTAGTGTCTGTGGAAAGTTTTATCATGAAGCCTGTGTCCGCAAATTCCCCA
CTGCCATCTTTGAGTCAAAAGGATTCCGCTGTCCCCAGCACTGTTGCTCTTCCTGCTCTATGGAGAAAGA
CATCCACAAAGCAAGTAAAGGCCGCATGATGAGGTGTCTGAGATGCCCGGTCGCCTATCACGTTGGAGAT
GCGTGTGTCGCTGCTGGAAGTGTATCTGTGTCCTCGCACATTCTCATCTGTAGTAACCATTCCAAGCGGA
GTAGTCAGTCTGCTGCTATAAACGTAGGCTTTTGTTTCGTTTGTGCCAGAGGGCTGATAGTTCAGGACCA
TTCAGACCCCATGTTCAGTTCCTATGCCTATAAATCCCACTACCTACTGAGTGAATCAAACCGTGCTGAG
TTGATGAAATTACCTATGATTCCTTCTTCGTCAGCTTCCAAAAAGAGATGTGAGAAAGGTGGAAGATTGC
TCTGCTGTGAATCGTGCCCTGCTTCCTTCCACCCAGAATGCCTGAGCATAGACATGCCAGAAGGCTGCTG
GAATTGCAATGACTGTAAAGCTGGCAAGAAACTGCATTACAAACAGATTGTTTGGGTCAAATTGGGAAAT
TACAGATGGTGGCCTGCAGAGATTTGCAGTCCCAGGTCTGTGCCGCTGAACATCCAGGGCCTTAAGCATG
ACTTGGGGGACTTCCCCGTGTTCTTCTTTGGTTCTCACGACTACTACTGGGTTCACCAAGGCAGAGTGTT
CCCTTACGTTGAAGGAGACAAACACTTTGCAGAGGGACAGACTAGCATTAACAAGACCTTCAAAAAAGCA
CTGGAAGAAGCTGCAAAACGTTTCCAGGAGCTGAAAGCCCAGCGTGAAAGCAAGGAGGCTTTGGAGATGG
AGAGGACCTCCAGGAAACCCCCTCCCTACAAGCACATCAAGGCCAACAAAGTCATAGGGAAGGTGCAGGT
CCAGGTGGCTGACCTGTCGGAGATCCCCCGCTGTAACTGCAAGCCTGGTGATGAGAACCCGTGTGGCCTG
GAGTCGCAGTGTCTGAACAGGATGTCACAGTATGAGTGTCACCCGCAGGTGTGTCCTGCTGGGGACCGCT
GTCAGAACCAGTGCTTTACAAAGAGGCTGTACCCCGATGCAGAGGTCATCAAGACCGAGCGGCGAGGATG
GGGCCTCAGAACCAAAAGAAGCATCAAAAAGGGGGAATTTGTAAACGAGTATGTCGGTGAATTAATTGAT
GAAGAAGAGTGCAGACTCCGAATCAAGCGAGCCCACGAGAACAGTGTAACTAATTTTTATATGTTAACTG
TTACCAAGGACCGTATAATTGATGCTGGACCAAAGGGAAATTATTCTCGTTTCATGAACCACAGTTGTAA
TCCAAACTGTGAGACACAGAAGTGGACTGTAAATGGAGACGTTCGAGTTGGACTATTTGCTCTTTGTGAC
ATTCCTGCAGGGATGGAGTTAACGTTTAACTATAACTTGGACTGTCTGGGCAACGGCAGGACAGTGTGCC
ACTGCGGAGCAGACAACTGTAGTGGATTTCTAGGAGTGCGGCCAAAGTCTGCATGCACATCAGCAGTTGA
CGAGAAGACAAAAAATGCCAAGTTGAAGAAGAGGCGGAAAGTCAAAGCGGAGGCAAAGCCAATCCATGAG
GATTATTGTTTTCAGTGTGGGGATGGTGGAGAACTGGTCATGTGTGACAAGAAAGACTGTCCCAAAGCTT
ACCACCTCCTATGCCTTAACCTGACTCAGCCACCCCACGGAAAGTGGGAGTGCCCGTGGCATCGGTGTGA
CGAGTGTGGCAGTGTAGCCGTTTCCTTCTGTGAATTCTGTCCACACTCATTCTGTAAGGCTCATGGAAAA
GGGGCTCTGGTGCCCTCTGCACTAGAAGGTCGTCTCTGCTGCTCCAGCCACGACCCTGCATCTCCTGTGT
CACCAGAATACTGGAGCAAGATCAGATGTAAATGGGAATCCCAAGATAGTGGAGAAGAAGTAAAGGAGTG
A

Translation (1446 aa):
MDFSFSFMQGIMGNTIQQPPQLIDSANIRQEDAFDNHSDIVEDGGPTPFEATLQQGFQYPPTTEDLPPLT
NGYPPSISLYETQTKYPPYNQYPNGSANGFGAVRNFSPTDYYHSEIPNTRPHEILEKPSPPQPPPLPPPP
PPPPPPPSVPQTVIPKKTGSPEIKLKITKTIQNGRELFESSLCGDLLNEVQASEHTKSKHESRKEKRKKS
NRHESSRSEERRSHKIPKLEPEGQNRPNERVDTAPEKPREEPVLKEAIPVQPILSSVPTTETSTGVKFQV
GDLVWSKVGTYPWWPCMVSSDPQLEVHSKINTRGAREYHVQFFSNQPERAWVHEKRVREYKGHEQYEELL
AEAAKQASNHSEKQKIRKPRPQRERAQWDIGIAHAEKALKMTREERVEQYTFIYIDKQPEEASSQAKKNV
TSKTEVKKPRRPRSVLNSQPEQTNAGEVASSQSSTDLRRQSQRRHTSLEEEEPPPVKIAWKTAAARKSLP
ASITMHKGSLDLQKCNMSPVVKIEQVFALQNATGDGKFIDQFVYSTKGIGNKTEISVRGQDRLIISSPSQ
RSEKPAQSASSPEATSGSAGPVEKKQQRRSIRTRSESEKSAEVVPKKKIKKEQVETAPQASLKTGLQKGA
SEISDSCKPLKKRSRASTDVETASCTYRDTSDSDSRGLSDGQVGFGKQVDSPSATADADASDAQSVDSSL
SRRGVGTSKKDTVCQVCEKAGDCLVACEGECCRHFHVECLGLTAVPEGHFTCEECETGQHPCFSCKVSGK
DVKRCSVSVCGKFYHEACVRKFPTAIFESKGFRCPQHCCSSCSMEKDIHKASKGRMMRCLRCPVAYHVGD
ACVAAGSVSVSSHILICSNHSKRSSQSAAINVGFCFVCARGLIVQDHSDPMFSSYAYKSHYLLSESNRAE
LMKLPMIPSSSASKKRCEKGGRLLCCESCPASFHPECLSIDMPEGCWNCNDCKAGKKLHYKQIVWVKLGN
YRWWPAEICSPRSVPLNIQGLKHDLGDFPVFFFGSHDYYWVHQGRVFPYVEGDKHFAEGQTSINKTFKKA
LEEAAKRFQELKAQRESKEALEMERTSRKPPPYKHIKANKVIGKVQVQVADLSEIPRCNCKPGDENPCGL
ESQCLNRMSQYECHPQVCPAGDRCQNQCFTKRLYPDAEVIKTERRGWGLRTKRSIKKGEFVNEYVGELID
EEECRLRIKRAHENSVTNFYMLTVTKDRIIDAGPKGNYSRFMNHSCNPNCETQKWTVNGDVRVGLFALCD
IPAGMELTFNYNLDCLGNGRTVCHCGADNCSGFLGVRPKSACTSAVDEKTKNAKLKKRRKVKAEAKPIHE
DYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPHGKWECPWHRCDECGSVAVSFCEFCPHSFCKAHGK
GALVPSALEGRLCCSSHDPASPVSPEYWSKIRCKWESQDSGEEVKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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