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Report for CCDS52545.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52545.1 Public Mus musculus 8 Micu3 23 108 98 CCDS HistoryNCBI Gene:78506Re-query CCDS DB by CCDS ID:52545.1Re-query CCDS DB by GeneID:78506See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52545.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068999.13 ENSMUSP00000070241.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068999.13Link to Ensembl Protein Viewer:ENSMUSP00000070241.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000068999Re-query CCDS DB by Protein ID:ENSMUSP00000070241
Original member Current member NCBI NM_030110.2 NP_084386.1 Accepted alive Link to Nucleotide Sequence:NM_030110.2Link to Protein Sequence:NP_084386.1Re-query CCDS DB by Nucleotide ID:NM_030110Re-query CCDS DB by Protein ID:NP_084386Link to BLAST:NP_084386.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084386.1 523 Q9CTY5 523 100% 0 0

Chromosomal Locations for CCDS 52545.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 40308051 40308410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40335810 40335963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40340298 40340329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40348940 40349018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40352036 40352083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40354303 40354385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40356856 40356927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40359410 40359448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40366149 40366244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40375537 40375637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40376096 40376267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40378832 40378940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40380672 40380829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40382109 40382177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGGCTGCGCTGCGGAGGTTCCTGTGGCCGCCGCCTCGGCTGTCGCCGGCGCTCGCCCCTCAGCAGCCCT
TCCTCTCACCGTGGGGGCGGCCTGCGGGGACGGCTCCCGGGATGTCGGGCCGGCCCTTCTCCTGCCGGGA
GGAGGACGAGGGGGCCGTCGCGGAGGCGGCGTGGCGGCGGCGACGCTGGGGCGAGCTGAGCATCGCGGCG
GCGGCTGGCGGGGGGCTGGTCGGCCTTGTGTGCTACCAGCTGTATGGGGACCCCAGAGCCGACCCCTCGG
AGCTAGCGGCCCCGGAACTCGAGGACCCGCCCCGCGGCAGGGGGCTGCTGCCCATCCCGGTGGCTGCTGC
CAAGGAGACGGTTGCTACTGGCAGAGCCATTACTGAAGACTTGGACCTCTATGCTACATCTCGAGAGAGA
CGGTTTCGTTTATTTGCATCTATAGAATGTGAAGGACAGTTATTCATGACTCCATATGATTTTATTCTGG
CTGTTACAACAGATGAGCCCAAATTTGCTAAAACGTGGAAGTCACTTTCTAAACAGGAATTAAGTCAGAT
GCTCTCAGAAACTCCACCAGTTTGGAAGGGATCATCAAAGCTTTTTCGAAATCTTAAAGAAAGAGGTGTG
ATTTCTTACACAGAATATCTTTTTCTTTTATGTATTTTAACAAAGCCCCATGCAGGTTTTAGAATAGCTT
TCAACATGTTTGACACTGACGGAAATGAGATGGTGGATAAAAAAGAATTTTTGGTGCTTCAGGAGATATT
CAGGAAAAAAAATGAAAAGAGAGAAACTAAAGGAGATGAAGAAAAACGTGCCATGCTGCGTCTTCAACTT
TATGGATACCATTCTCCTACTAATAGTGTACTTAAAACAGATGCTGGGGAACTTGTCTCCAGAAGCTACT
GGGATACCCTGAGACGTAGCACAAGCCAGGCGCTCTTCTCAGACCTCGCAGAGCGTGCTGATGACATCAC
AAGCTTAGTAGCAGATACTACACTTCTGGTACACTTTTTTGGAAAAAAAGGAAAAGCTGAGCTCAACTTT
GAAGATTTTTATAGATTTATGGACAATCTACAAACAGAAGTTCTAGAAATAGAATTTCTTTCCTACTCTA
ATGGAATGAATACTATCAGTGAAGAAGATTTTGCCCATATTCTCCTGCGGTATACTAATGTGGAAAATAC
ATCAGTATTTTTAGAAAATGTGCGCTACAGTATATCTGAAGAAAAGGGCATCACATTTGATGAGTTCAGG
TCATTCTTCCAGTTTCTGAACAACTTAGAAGACTTTGCAATAGCTCTCAACATGTATAACTTTGCAAGCC
GCTCTATAGGACAAGATGAATTTAAACGTGCTGTATACGTAGCTACTGGACTGAAACTTTCACCACATTT
GGTGAACACTGTCTTCAAGATTTTTGATGTTGACAAAGATGACCAATTAAGTTATAAAGAATTTATTGGA
ATTATGAAAGACAGACTCCATAGAGGGTTCCGGGGTTATAAAACAGTCCAGAAGTATCCGACCTTCAAAT
CCTGCCTGAAAAAGGAACTTCACAGCAGATAA

Translation (523 aa):
MAALRRFLWPPPRLSPALAPQQPFLSPWGRPAGTAPGMSGRPFSCREEDEGAVAEAAWRRRRWGELSIAA
AAGGGLVGLVCYQLYGDPRADPSELAAPELEDPPRGRGLLPIPVAAAKETVATGRAITEDLDLYATSRER
RFRLFASIECEGQLFMTPYDFILAVTTDEPKFAKTWKSLSKQELSQMLSETPPVWKGSSKLFRNLKERGV
ISYTEYLFLLCILTKPHAGFRIAFNMFDTDGNEMVDKKEFLVLQEIFRKKNEKRETKGDEEKRAMLRLQL
YGYHSPTNSVLKTDAGELVSRSYWDTLRRSTSQALFSDLAERADDITSLVADTTLLVHFFGKKGKAELNF
EDFYRFMDNLQTEVLEIEFLSYSNGMNTISEEDFAHILLRYTNVENTSVFLENVRYSISEEKGITFDEFR
SFFQFLNNLEDFAIALNMYNFASRSIGQDEFKRAVYVATGLKLSPHLVNTVFKIFDVDKDDQLSYKEFIG
IMKDRLHRGFRGYKTVQKYPTFKSCLKKELHSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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