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Report for CCDS52556.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52556.2 Public Mus musculus 8 Ddx60 23 108 98 CCDS HistoryNCBI Gene:234311Re-query CCDS DB by CCDS ID:52556.2Re-query CCDS DB by GeneID:234311See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 52556.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 52556.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070631.14 ENSMUSP00000070741.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070631.14Link to Ensembl Protein Viewer:ENSMUSP00000070741.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000070631Re-query CCDS DB by Protein ID:ENSMUSP00000070741
Original member NCBI NM_001293783.1 NP_001280712.1 Updated not alive Link to Nucleotide Sequence:NM_001293783.1Link to Protein Sequence:NP_001280712.1Re-query CCDS DB by Nucleotide ID:NM_001293783Re-query CCDS DB by Protein ID:NP_001280712
Current member NCBI NM_001293783.2 NP_001280712.1 Accepted alive Link to Nucleotide Sequence:NM_001293783.2Link to Protein Sequence:NP_001280712.1Re-query CCDS DB by Nucleotide ID:NM_001293783Re-query CCDS DB by Protein ID:NP_001280712Link to BLAST:NP_001280712.1

Chromosomal Locations for CCDS 52556.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 61940103 61940106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61940291 61940357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61940603 61940792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61942292 61942633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61945852 61945968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61948812 61948973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61950427 61950585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61954498 61954639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61956115 61956270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61958045 61958150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61958561 61958676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61963584 61963741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61969453 61969705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61972155 61972321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61974035 61974193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61975759 61975908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61977884 61978003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61979257 61979352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61982482 61982597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61983801 61983943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61984080 61984189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61987352 61987456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61988040 61988168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61989810 61989934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61994376 61994534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61998632 61998779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 62000551 62000703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 62009942 62010046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 62012271 62012471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 62017141 62017245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 62017742 62017883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 62021288 62021409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 62023150 62023297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 62024849 62024991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 62033375 62033526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 62035042 62035104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 62037035 62037134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5133 nt):
ATGGAAAAAAAATACACAGGTTTTTTAAAAATAATGTCACATTTAATCTTGGAAACTATGTCAAAGGCTG
ACTACTCCAGCTTATTCAATGATTTTGTTGAATCTGAGTTCTTTCTGATTGATGGCGACTCCTTGCTCAT
CACGTGTGCGTGTGAGAGGTCACTTAAGCCAGGACAGAGTCTCCACTTCTTCTACCTGGTTGAGCGCTAC
CTGTTGGATGTTATTAGCAAAGGAGGGCAATTTGCCATAGTTTTCTTCAAGGATGCTGAGTATGCATACT
TCAATGTCCCCGAACTTCTGACACTGAGAACTGCTTTAATTCTGCATCTTCAGAAGAATACCACTGTTGA
AGTTTGGACTAAGTTTTCTAACTGCTTGTCAGAAGAGTGGAATATTTGCTTGGGTCAGAGTTGCCCATAT
TTCTTGATACTGGCTGATGAAGGCCTGAACGACCTGCAGACACATCTTTTCAACTTTGTAGTTATTCAGG
CCTGGGCAGCAAAGGTCAATATTGTGCTCTTCTCAGGACAGACATCTGACATCCTTCGTCTTTATGCATA
CTTTATGCAAAGCTCTCATGGAATGCAGATGTTCTTCAAGGAGAATAAGAGAATGATCATGATTGTTTAC
AAAAGCCTGATTCAACAGCTGGAAAAATACAGAGATATGGCTTTAGCACATCTGTTCGGAGATTTAAAAT
TCAATGATATGGAAGAGAAGGTATGTGAAACTGTATCTCTGCTGAAACAACTCTGGCCAGAAGGATCTGA
CATCCGATGTGTCTTTTGTGTCACCTCATGTTCTCTCTTCTTGGAAATGTATCACTGCTACTTAGAAAGC
AGAGAGAAAGGAGCATCTGAGGAGATGTCCAAAGTCAAACAGAAAACAGATAATTGCTTAACCCTGAAGG
ACATGGAAGACTTTTGTAAGCTACATTGCCTCAGTGTGGCTCTTTTGCTCCATGTACCTCTCTCTCAGAG
AGCTCGCTCAAGATTCATCACTGCTAATTGGATTCAGGACCTCAAGACTGTCCTAAAAATGAAAAAGTGG
TGCGAGTATTTTATCCTAAGTAATTTGGATATGTTTGAATCTTGGAGTCTGAATTTACTTCACCTTTCTG
ACTTAAGTGATGAGCCTTTGTTGAGGAATATTGCTTTTTACTATGAAAATGAAAATAAAGAAGGCCTGGA
TTTGAATGTGGGAGATGCCATCATGAACGAGTATGTACATCTCTGGGACACTGTGTCAAAGTTGGTCAGA
AAGTTTGATGTGGGAAAACCAATTCCTTTGAGAACAACAAAAGTTCATTTTCTTGAAAAGACACCATCAC
CAATCAAAGAAAGTTCCCAGGAGATGATGCCAAATTTAGGTTTTATTCCAATGTCATGTAATTTAGTTGA
TGAATTTACTGGAGACATTTTGAAAGACTTGCCTTTCCTAATGAGTGATGACCCCATTGTTACGTCACTG
GTAAAGCATAAGGAATTTGATGAGCTTGTGCACTGGCACTCCCACAGACCTCTCAGTGATGATTATGACA
GGACAAAGGTGAATTCTGGAGACAGAAGAGACCCCAATCATCTTAAAAGGTTGCAGAAGTATCATAGTTT
TCAACGATTTTATGGGGAGTCATTAGAATCAGTCACTTCAAAGACCATCACAACTCAAGGTCCTAAGCCA
AAGAAGGATTGTATTAAGTCCAAGAGCACAAAGGCACATGAGACCAAGGCTGAAATAATTAAAAGAGAAA
ATAAGAAGAGGTTAATTGCTGAGGAAGAACAAAAAGAAGAGCAAAAATGGAATGCCCTGTCATTTTCTAT
CGAGGAGGAAATGAGAAAGAATGTAGACTCAGGAATGAAGAAACTGGAAGAGTTTTTGAAATCATGTAAA
AGTCGCTCAGTAAAAGCTCAGGTTGAAAGAGTTGGGTTACAGGCTTGCTTGAAAGCCTGGAAGGAACATT
GCCAGGCTGAAGGTGAAACCACGAAAGACTTAAGCATAGCTGTCAATATGATGAAGAGGATCCATTCCTT
GTTGGACAAACACTCTGAACTTCTGCAAGAAGCAGATCAGAAACTCATAGCCAGATGTCTTAAGTATTTA
GGGTTTTGTGAGCTAGCAGTTTCTTTATATCCAACTCAGGATGCATCAGATGGCATAAAAATGAAGAAAA
AGAATAAATATTCAGTTGGGATTGGGCCGGCTCGGTTCCAACTACAATATATGGGTCATTATTTAATACG
AGAAGAAAGAAAAGACCCAGACCCCAGGGTCCAAGATTTTATTCCTGACACATGGCAGCGAGAGCTCCTG
GATGTGGTGGATAACTATGAGTCTGCAGTAATTGTTGCCCCAACATCATCTGGCAAGACTTATGCTTCCT
ACTATTGCATGGAAAAGGTGCTGAAAGAGAGCGATGAAGGCGTGGTTGTGTATGTTGCACCAACAAAGGC
TCTTGTTAATCAAGTGGCAGCAACTGTTGAATATCGTTATGCCAAAAATATGCCAGCTGGTGAATCTCTT
TGTGGTGTTTTTACCAGGGATTATCGCCATGATGCCCTCAACTGTCAGGTGCTTATAACTGTTCCTGCCT
GCTTTGAAATTCTGCTACTAGCTCCTCATCGCCAAAATTGGGTGAAGAGGATCAGATATGTTATATTTGA
TGAGGTCCATTGCCTTGGTGGAGAAATTGGAGCGGAAATCTGGGAGCATCTCCTTGTTATGATCCGATGT
CCCTTTTTGGCCCTTTCAGCTACCATTAGCAACCCTCAGCATCTCACCGAGTGGCTTCAGTCAGTAAAGC
GGTACTGGAAGCAAGTAGACAGTACCATGGAGGAAAGAACTGTTTCCAAAAGAACTGGTACCTCCCGTGG
CAGCTATTACAAAGATCAAGCGCAAGCCAGACAGTCCTACAAAGTTAGACTTGTGCTCTATGGAGAGAGA
TACAATGACCTAGAGAAGTATTTGTGTTCCGTGAGACAGGGCGATGTTTGCTTTGATCATTTTCACCCCT
GCGCTGCACTAACCATAGATCACATTGAAAAGTATGGATTTCCTTCTGATCTTGCCCTTTCACCCCGAGA
AAGCATACAGCTGTATGACACTATGTGCCAGGTCTGGAAGAGTTGGCCCCAGGCCCAGAGCCTATGTCCA
GAGAACTTCACTCAATTTAAGAATAAAATAGTCATTAAGAAGTTGGATGCTAGAAAATATGAAGAGAGCT
TAAAGGAAGAATTCACGAATTGGGTTAAAAATGGGAACGAGGAGGAGGCCAGGATGGTGCTGAAGAAACT
GAGCCCTGATTACCATGAGCACTCAGGGAGGATGCTGGATTTCTTTCCATGTCTTGTTGAGAAGCTAAGG
AAAATGGAGAAGTTGCCTGCACTATTCTTTTTATTTAAGTTAAATATTGTAGAAGAATGTGCTGAAAATG
CTTTCGAATTTCTGGAGAAAAAACAGGAAGAAAAAAGACCTCCCAAAGCTGACAAAGAAGCTCGTACCAC
GGCTAACAAACTTCGGAAAGTTAAAAAATCTCTGGAGAAACAAAAGACAGTAGATGAAAAGGGCCAGAAA
TCTTCCAGAAGATTGGATGAAAGCGTTATGCATGAAACAGAACACAATTACCTCCTGCAGACTCTGGAGA
AGAATCTGGAGATTCCCAAGGACTGCACATATGCTAATCAGAAGGCAATAGATGATCAGTTATTGCAGAG
GGTGTTTCACCGGGTGAGATTCGAACGTAAAGGTGAAACACTGAAGAGGTTGGCAGAAAGGGGCATTGGC
TACCACCACAGTTCCATGAGTGCCAAAGAAAAGCAGTTGGTCGAAATTCTCTTCAGGAAAGGATTCATCA
GGGTGGTGACAGCTACTGGAACACTCGCTTTGGGAATCAACATGCCCTGTAAATCTGTGGTTTTTGCACA
AAACTCAGTCTATCTGGATGCTTTAAATTACAGACAGATGTCTGGTCGGGCTGGAAGACGAGGGCAAGAC
CTGTTGGGTGATGTCTACTTCTTTGATATTCCACTGCCCAAAATAGGAAAACTCATAAAATCCAAAGTTC
CTGAACTTAGAGGACAGTTTCCCCTCAGTATTTCACTCATCCTAAGACTCATGTTGCTGGCTTCCAAGGC
GGATGACCTAGAGGATGGCAAGGCAAAGGCACTGTCAGTGCTGAAGCATTCATTGTTATCCTTCAAACAA
CCCCGAGCCATAGACATGTTAAAGCTTTACTTCTTATATTCTTTGCAGTTCCTGGTGAAAGAGGGACATA
TAGATCAAGAAGGTAATCCTACAGGGTTTGCTGGCCTTGTCTCCCATTTACATTACCACGAACCTTCTAA
TCTCGTGTTTGTCAGTTTTCTTGTAAAAGGCCTTTTCCATAAACTTTGTCAGCCAACAAGGGAAGGCCCA
AAACGTTTTTCTGAAGATGTAATGGAAAAGCTGGTTTTGGTATTGGCAAATCTTTTTGGAAGAAGATATA
TCCCAGCCAAGTTCTATGAGGTTAACTCCAAGTTTTATCAATCAAAGGTGTTCCTTGATGACCTTCCCGA
GGACTTCAGTCACGCCCTGCTTGAGTACAATACGCAAGTGACAGAAGACTTCGCTTCCTTTCTGCTAATG
GTATCCCGATTGGCTGATATGAAACAGGAGTATCAACTCTCCTTGTCAAAAATCGAGTTCACAGGTAAAG
AATGTGAAGATTCGCCACTTGTGTCTCACTTGATGAACTGCAAGGAAGGAAGGGTGGCGGTTTCACCCTT
TGTTTGTCTGTCTGGAAACTTTGATGTGGATTTGCTTAGTCCAGGAGTTCCAAATCATGTCATTCTACAC
ACACTTGGTATCAATCACACACAAGCCCCGGTGCTGTGGCCATACGCATTGGATAGTCAAGGAAGAAAAA
TTCCACTTAATGCCTATGCACTTGATTTCTATAAGCATGGATCCCTTATTGGATTAGTCCAGGACAATAG
GATACATCCAGGGGAAGCTTATAGCCTGTTGAAAGATTTTAATCTTATCATTAAGTCTATCAGTGTCTCC
TTGCGTGAACTGTGTGAAAATGAAGAAGACAATGTTGTTTTAGCATTTGAACAATTGTCTACGTCTTTTC
AAGAGAAGTTTGAATTAGTGTGA

Translation (1710 aa):
MEKKYTGFLKIMSHLILETMSKADYSSLFNDFVESEFFLIDGDSLLITCACERSLKPGQSLHFFYLVERY
LLDVISKGGQFAIVFFKDAEYAYFNVPELLTLRTALILHLQKNTTVEVWTKFSNCLSEEWNICLGQSCPY
FLILADEGLNDLQTHLFNFVVIQAWAAKVNIVLFSGQTSDILRLYAYFMQSSHGMQMFFKENKRMIMIVY
KSLIQQLEKYRDMALAHLFGDLKFNDMEEKVCETVSLLKQLWPEGSDIRCVFCVTSCSLFLEMYHCYLES
REKGASEEMSKVKQKTDNCLTLKDMEDFCKLHCLSVALLLHVPLSQRARSRFITANWIQDLKTVLKMKKW
CEYFILSNLDMFESWSLNLLHLSDLSDEPLLRNIAFYYENENKEGLDLNVGDAIMNEYVHLWDTVSKLVR
KFDVGKPIPLRTTKVHFLEKTPSPIKESSQEMMPNLGFIPMSCNLVDEFTGDILKDLPFLMSDDPIVTSL
VKHKEFDELVHWHSHRPLSDDYDRTKVNSGDRRDPNHLKRLQKYHSFQRFYGESLESVTSKTITTQGPKP
KKDCIKSKSTKAHETKAEIIKRENKKRLIAEEEQKEEQKWNALSFSIEEEMRKNVDSGMKKLEEFLKSCK
SRSVKAQVERVGLQACLKAWKEHCQAEGETTKDLSIAVNMMKRIHSLLDKHSELLQEADQKLIARCLKYL
GFCELAVSLYPTQDASDGIKMKKKNKYSVGIGPARFQLQYMGHYLIREERKDPDPRVQDFIPDTWQRELL
DVVDNYESAVIVAPTSSGKTYASYYCMEKVLKESDEGVVVYVAPTKALVNQVAATVEYRYAKNMPAGESL
CGVFTRDYRHDALNCQVLITVPACFEILLLAPHRQNWVKRIRYVIFDEVHCLGGEIGAEIWEHLLVMIRC
PFLALSATISNPQHLTEWLQSVKRYWKQVDSTMEERTVSKRTGTSRGSYYKDQAQARQSYKVRLVLYGER
YNDLEKYLCSVRQGDVCFDHFHPCAALTIDHIEKYGFPSDLALSPRESIQLYDTMCQVWKSWPQAQSLCP
ENFTQFKNKIVIKKLDARKYEESLKEEFTNWVKNGNEEEARMVLKKLSPDYHEHSGRMLDFFPCLVEKLR
KMEKLPALFFLFKLNIVEECAENAFEFLEKKQEEKRPPKADKEARTTANKLRKVKKSLEKQKTVDEKGQK
SSRRLDESVMHETEHNYLLQTLEKNLEIPKDCTYANQKAIDDQLLQRVFHRVRFERKGETLKRLAERGIG
YHHSSMSAKEKQLVEILFRKGFIRVVTATGTLALGINMPCKSVVFAQNSVYLDALNYRQMSGRAGRRGQD
LLGDVYFFDIPLPKIGKLIKSKVPELRGQFPLSISLILRLMLLASKADDLEDGKAKALSVLKHSLLSFKQ
PRAIDMLKLYFLYSLQFLVKEGHIDQEGNPTGFAGLVSHLHYHEPSNLVFVSFLVKGLFHKLCQPTREGP
KRFSEDVMEKLVLVLANLFGRRYIPAKFYEVNSKFYQSKVFLDDLPEDFSHALLEYNTQVTEDFASFLLM
VSRLADMKQEYQLSLSKIEFTGKECEDSPLVSHLMNCKEGRVAVSPFVCLSGNFDVDLLSPGVPNHVILH
TLGINHTQAPVLWPYALDSQGRKIPLNAYALDFYKHGSLIGLVQDNRIHPGEAYSLLKDFNLIIKSISVS
LRELCENEEDNVVLAFEQLSTSFQEKFELV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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