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Report for CCDS52565.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52565.1 Public Mus musculus 8 Zfp781a 23 108 98 CCDS HistoryNCBI Gene:211135Re-query CCDS DB by CCDS ID:52565.1Re-query CCDS DB by GeneID:211135See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52565.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078257.6 ENSMUSP00000077378.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078257.6Link to Ensembl Protein Viewer:ENSMUSP00000077378.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000078257Re-query CCDS DB by Protein ID:ENSMUSP00000077378
Original member NCBI NM_172491.2 NP_766079.1 Updated not alive Link to Nucleotide Sequence:NM_172491.2Link to Protein Sequence:NP_766079.1Re-query CCDS DB by Nucleotide ID:NM_172491Re-query CCDS DB by Protein ID:NP_766079
Current member NCBI NM_172491.3 NP_766079.1 Accepted alive Link to Nucleotide Sequence:NM_172491.3Link to Protein Sequence:NP_766079.1Re-query CCDS DB by Nucleotide ID:NM_172491Re-query CCDS DB by Protein ID:NP_766079Link to BLAST:NP_766079.1

Chromosomal Locations for CCDS 52565.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 69300776 69300821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69301991 69303162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1218 nt):
ATGATATTGAAGAACATTTTTGTCAAAATTCTAGAATACATAGAAGGCATGAAAGAGGTCCTGGAGAGAA
ACCCTATGAATATACTCAGTGTGGTAAAGCCTTTGCACAACACAGTCATCTTCAAGGGCATGAAAGAATT
CTTACTGGAAAGAAACCCTATGAATGTAATCAATGTGGTAAAGCCTTTATATGTCACAGTAGTCTTTCAA
ATCATGAAAAGCATCATACTGGAGAGAAACCATACAAATGTATTGAATGTGGTAAAGCCTTTTCACAACA
GAGTCACCTCCAGATACATAAAAGAATACATACTGGAGAGAAGCCCTATGAATGTAATCAGTGTGCTAAA
GCCTTTTCACAACAGAGCCATCTCCAGAAACATAAAAGAACACATACTGGAGAGAAGCCCTACAAATGTA
ATCAATGTAATAAAGACTTTTCACAACAAAGTCATCTCCAAATCCATAGAAGAACACATACTGGAGAGAA
ACCCTACAAATGTAATCAATGTGATAAAGTCTTTTCACAACAAACTCATCTCCAAAGACATAAAAGAACA
CATACTGGAGAGAAGCCCTACAAATGTAATCAATGTGGTAAAGCCTTTGCTCATCACAGTTATCTTGAAA
AACATCAAAGAACACACACTGGAGAGAAACCTTATCAATGCAACCAATGTGGTAAAGCCTTTGCACATCA
CAGTTATCTCCAAAAACATAAAAGAACACACACTGGAGAGAAACCTTATCAATGCAATCAATGTGGTAAA
ACTTTTGCATGTCACAGAAGTCTTCAAATTCATGAAAGAATTCATACTGGAGAGAAACCTTATGAATGTT
GTCAATGTGGTAAGACCTTTGCACATCACAATTATCTCCGAAACCATAAAAGAACACATACTGGAGAGAA
CCCCTACAAATGTAAGGAATGCGGTAAAGCCTTTGCATGTCACAGTCATCTTCAAAGGCATGAAAGAGTT
CATACTGGAGAGAAACCCTATGAGTGTAGTCAATGTGGTAAAGCCTTTGCATGTCACAGCAGTCTTCAAA
ATCATGAAAAAAATCATATTGAAGAGAAACTCTATGAATTATGTAAGCAATATGGTAACGCCTTTGTACA
TCACAGTTATCTCTGAAAACATAAAACACAAAAGAATATATTCTACAGAATATAATCAGGATTTTAAAGT
CATGTCACAGTTGTCTTTGAGGACATGA

Translation (405 aa):
MILKNIFVKILEYIEGMKEVLERNPMNILSVVKPLHNTVIFKGMKEFLLERNPMNVINVVKPLYVTVVFQ
IMKSIILERNHTNVLNVVKPFHNRVTSRYIKEYILERSPMNVISVLKPFHNRAISRNIKEHILERSPTNV
INVIKTFHNKVISKSIEEHILERNPTNVINVIKSFHNKLISKDIKEHILERSPTNVINVVKPLLITVILK
NIKEHTLERNLINATNVVKPLHITVISKNIKEHTLERNLINAINVVKLLHVTEVFKFMKEFILERNLMNV
VNVVRPLHITIISETIKEHILERTPTNVRNAVKPLHVTVIFKGMKEFILERNPMSVVNVVKPLHVTAVFK
IMKKIILKRNSMNYVSNMVTPLYITVISENIKHKRIYSTEYNQDFKVMSQLSLRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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