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Report for CCDS52609.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52609.1 Public Mus musculus 8 Tecr 23 108 98 CCDS HistoryNCBI Gene:106529Re-query CCDS DB by CCDS ID:52609.1Re-query CCDS DB by GeneID:106529See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52609.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165740.8 ENSMUSP00000131389.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165740.8Link to Ensembl Protein Viewer:ENSMUSP00000131389.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165740Re-query CCDS DB by Protein ID:ENSMUSP00000131389
Original member Current member NCBI NM_027179.1 NP_081455.1 Accepted alive Link to Nucleotide Sequence:NM_027179.1Link to Protein Sequence:NP_081455.1Re-query CCDS DB by Nucleotide ID:NM_027179Re-query CCDS DB by Protein ID:NP_081455Link to BLAST:NP_081455.1

Chromosomal Locations for CCDS 52609.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 83571808 83571935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83572013 83572058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83572232 83572320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83572398 83572455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83572549 83572592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83572681 83572753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83572841 83572946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83573028 83573143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83573220 83573323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83573871 83573922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83574478 83574528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83594340 83594354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGAAGCACTACGAGGTGGAGATTCGGGATGCAAAGACGAGGGAGAAGCTGTGCTTCCTGGACAAGGTAG
AGCCTCAGGCCACCATTTCTGAAATCAAGACCCTTTTCACCAAGACACAGGGGAAGTCCCTGAAAGATGA
AGATGTCTTACAGAAGCTTCCTGTGGGCACCACAGCCACACTCTACTTCCGGGACCTCGGGGCCCAGATC
AGCTGGGTGACGGTCTTCCTGACGGAGTATGCCGGGCCCCTTTTCATCTACCTGCTCTTCTACTTCCGGG
TACCCTTCATTTATGGCCGCAAATACGACTTTACGTCCAGTCGGCATACGGTGGTGCACCTCGCCTGCAT
GTGCCACTCGTTCCACTACATCAAGCGCCTGCTGGAGACTCTCTTCGTGCACCGATTCTCTCACGGAACC
ATGCCTTTGCGAAACATCTTCAAAAACTGCACCTACTATTGGGGCTTTGCTGCATGGATGGCTTATTACA
TCAACCACCCTCTCTACACACCCCCTACCTATGGAGTTCAGCAGGTTAAGCTGGCACTGGCCGTTTTTGT
GATCTGCCAGCTTGGGAACTTCTCCATCCACATGGCTCTTCGGGACCTTCGGCCTGCTGGGTCGAAAACC
AGGAAGATCCCATACCCCACCAAGAACCCCTTCACCTGGCTGTTCCTGTTGGTGTCCTGTCCCAACTACA
CTTATGAGGTGGGCTCCTGGATTGGCTTTGCCATCTTGACTCAGTGTGTCCCAGTGGCCCTCTTCTCCCT
GGTGGGCTTCACCCAGATGACTATCTGGGCCAAGGGCAAACACCGCAGCTACCTGAAGGAGTTCCGCGAC
TACCCGCCCCTGCGCATGCCCATTATTCCCTTCCTGCTCTGA

Translation (293 aa):
MKHYEVEIRDAKTREKLCFLDKVEPQATISEIKTLFTKTQGKSLKDEDVLQKLPVGTTATLYFRDLGAQI
SWVTVFLTEYAGPLFIYLLFYFRVPFIYGRKYDFTSSRHTVVHLACMCHSFHYIKRLLETLFVHRFSHGT
MPLRNIFKNCTYYWGFAAWMAYYINHPLYTPPTYGVQQVKLALAVFVICQLGNFSIHMALRDLRPAGSKT
RKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAILTQCVPVALFSLVGFTQMTIWAKGKHRSYLKEFRD
YPPLRMPIIPFLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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