NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52660.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52660.1 Public Mus musculus 8 Ripor1 23 108 98 CCDS HistoryNCBI Gene:75687Re-query CCDS DB by CCDS ID:52660.1Re-query CCDS DB by GeneID:75687See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52660.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043531.9 ENSMUSP00000039966.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043531.9Link to Ensembl Protein Viewer:ENSMUSP00000039966.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000043531Re-query CCDS DB by Protein ID:ENSMUSP00000039966
Original member Current member NCBI NM_001081241.2 NP_001074710.2 Accepted alive Link to Nucleotide Sequence:NM_001081241.2Link to Protein Sequence:NP_001074710.2Re-query CCDS DB by Nucleotide ID:NM_001081241Re-query CCDS DB by Protein ID:NP_001074710Link to BLAST:NP_001074710.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074710.2 1223 Q68FE6 1223 100% 0 0

Chromosomal Locations for CCDS 52660.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105614422 105614525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105614641 105614793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105614943 105615021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105615428 105615451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105615544 105615597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105615713 105615865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105615979 105616042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105616128 105616171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105616258 105616383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105616878 105617026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105617102 105617231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105617316 105618725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105618814 105618935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105619788 105619920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105620179 105620314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105620415 105620576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105620850 105621008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105621114 105621310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105621394 105621477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105621571 105621661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105621805 105621902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3672 nt):
ATGATGTCCCTGTCGGTGCGGCCGCAGCGCCGCCTGCTCAGCGCCCGGGTCAGTAGGAGCCAGTCCTTCG
CAGGCGTCCTCGGCAGCCACGAGCGCGGGCCCAGGAGCTTCACTGTCTTCAGCCCACCAGGGCCCCCACG
GAAGCCCCTAGTGCTCTCCCGAGTGTCAAGGATGTTTTCTGTGGCCCATCCAGCTCCCAAGGTGCCGCAG
CCAGAGAGGCTGGACCTGGTGTACACTGCTCTTAAGCGGGGACTGACGGCCTACTTGGAAGTGCATCAGC
AGGAGCAGGAGAAGCTCCAGCGCCAGATAAAGGAGTCCAAAAGGAATTCCCGCCTAGGCTTCCTGTATGA
CTTGGACAAGCAAGTCAAGTCCATTGAACGCTTTCTTCGACGACTGGAATTCCATGCCAGTAAGATTGAC
GAGTTGTATGAAGCATACTGTGTCCAGCGGCGTCTCAGGGATGGTGCCTACAACATGGTCCGCGCCTATA
GCACTGGGTCCCCAGGGAGTCGAGAGGCCCGAGACAGCCTGGCCGAGGCCACTCGAGGCCATCGAGAGTA
TACAGAGAGCATGTGTCTTCTGGAGAATGAGCTGGAGGCACAGTTGGGCGAGTTTCATCTCCGGATGAAA
GGGCTGGCTGGCTTCGCCAGGCTGTGTGTGGGCGATCAATATGAGATCTGCATGAAATATGGCCGTCAGC
GCTGGAAGTTGCGAGGCCGGATAGAGAGTAGTGGCAAGCAGGTGTGGGACAGTGAAGAGACCGTCTTTCT
TCCTCTACTCACAGAATTCCTGTCTATCAAGGTGACAGAATTAAAGGGACTGGCTAACCACGTAGTCGTG
GGCAGTGTCTCCTGTGAGACCAAGGACCTGTTTGCCGCCCTGCCCCAGGTTGTGGCTGTGGATATCAATG
ATCTTGGCACCATCAAGCTAAGCCTAGAAGTCATATGGAGTCCCTTTGACAAGGATGACCAGCCTTCAGC
TGCTTCTACAGTCAACAAAGCTTCCACAGTCACCAAGCGATTTTCCACATATAGCCAGAGCCCGCCAGAC
ACACCCTCACTCCGAGAACAGGCCTTTTATAACATGTTACGGCGACAGGAGGAGCTCGAGAATGGGACGG
CCTGGTCCCTGTCCTCTGAATCGTCAGATGATTCATCAAGCCCGCAGCTCTCTGGCACAGCTCGACACTC
AACTCCCAAGCCTCTGGTGCAACAGCCTGAGCCCCTGCCTGTCCAAGTTGCCTTCCGAAGGCCAGAGAGC
CTCACGTCTGGTTCCATGGATGAAGAGCCAGCCATGACCCCATCCCTGGTCAATGGGCATGCCCCTTACA
GCCGGACTCTCAGCCACATCAGCGAGGCCAGCGTGGATGCTGCCTTGACTGAGGCCGTGGAAGCTGTGGA
CTCACAAAGCCCAATCCCAGGGCCTAGCCCGCTTGTCTATCCAGATTCCACCCACGTGGAGCGTGTCAGT
AGTGTTCTGCCTGTCCTCAACAATGGCCATTCTGCCACAAGTCCCGCCCTCAGTACAACTGGCCCCGCCC
CCACATTTATAGACCCTGCCCCAACGACACAGCTAGACTTGGTTCACAAAACCACAGACTCCGCCCCTTC
TGAGTTGCCCAGCATCACACATACTACGACAAGCTCTGCATATAGTGCTGTAAGCCTTGTCAACAGTGTT
CCAAGCCTAACTTCCACCACTATAGGTTCTGCCCACACAACCACGCCCTCTCCCCTCACCTCCACAGGCT
CTGTTCCCAATGCAACAGACTCAACCCAGGCTACCCCAAGCCCTACTCACAGTACCCCAAGCCCTACCCA
TACTACTATACGCCTCACCCACACCACTGTAAGCCCTACACATAGCTCCCCGAGCCCCATACACACTACC
CCGAGCCCCACCCATACCACTGTAAGTCCCACCTGCACTACTCCAAGCTCCGGCCACAGTACCACTAGTC
CCACTCAAGAAGCCAAGATGTCAACTCATACCACCGGTGCTGTGGGCCCGGTCCAGACCACTACAAGTCC
CATTTCCACAACTGAAAGCCCCTCCCCTTCTACAGACGTGGCTATAATCTCCAGCTCCTCTGCAGAATCC
ACCGGCCCAGGCACTGAACCTCTGCCCTGTAGTCACCCAGCCTCCCCTCCCTACACTAAAGCAGACCCCA
CAGCTTCCTGCACCTCTTACCAGAGTCTTGCTTCCTCTGGTTCAAAACCCCTCACAAGCCCTGCCCCGGA
TTCCCCAGAACAAATCCCTAAGAGCCCAAGTTCCTCTCCCTCATCTAGTGCCCCTGAACCCCAACATTCA
GAACATAACCTGGCCGCAGTTGCTCAAGCCCCAGTCCCTGAGGCAACGGGAGGAGCTGGGGACAGAAGGC
TTGAAGAAGCTCTTGGGACCCTAATGTCTGCCCTTGATGACTATCGTGGTCAGTTCCCTGAGCTGCAGGG
CCTGGAGCAGGAGGTGACTCGGCTGGAGAGTCTGCTCATGCAGAGACAAGGCCTGACTCGAAGCCGGGCT
TCCAGTCTTAGCATCACTGTGGAGCATGCCCTGGAGAGCTTCAGCTTCCTCAATGATGATGAAGATGAAG
ACAACGATGGTCCCGGGGACAGGCACACAAGCAGCCCAGAGGTTGTGGCAGAGGACAGACTAGACTCATC
AAATGGCCAGTCTCTAAGCACAGGGTGTTCAGCCCTGGATGCTACCTTGGTCCAGCACCTGTACCACTGC
AGCCGCCTCCTGCTGAAACTGGGCACATTTGGACCCCTGCGCTGCCAGGAGGCCTGGGCCCTGGAACGGC
TGCTGCGGGAAGCGCGTGTATTCCAGGAAGTGTGTGAACGCAGCAAGCTATGGGGGAACTCTGCCACATC
TGCCCAGGAAGTGGTACAGTTCTCCGCCTCTCGGCCCGGCTTCCTGACCTTTTGGGACCAGTGTACAGAG
GGACTCAGCCCCTTCATCTGCTCTGTGGAGCGGGTGCTCCTCACCTTCTGCAGCCAGTACGGTGCCCGTC
TTTCCCTGCGCCAGCCAGGCTTAGCCGAGGCTGTGTGTGTGAAGTTCCTGGAAGATGCCCTGGGACAGAA
GCTGCCCAGGAGGCCCCAACCAGGCCCGGGGGAGCAGTTCACCATCTTCCAATTCTGGAGTTATGTAGAA
GCCTTGGACAGCCCCTCCATGGATGCCTATGTGACAGAGACTGCAGAGGAGGTGTTACTAGTACAGAACC
TGAACTCTGATGACCAGGCCGTTGTGCTGAAAGCCCTAAGGTTAGCACCGGAGGGGCGCCTGCGAAAGGA
TGGGCTTCGGGCTCTTAGCTCCCTGCTGGTCCACGGCAACAACAAAGTCATGGCTGCTGTCAGCACTCAG
CTTCGGAGCCTGTCACTTGGTCCTGTCTTCCGGGAAAGGGCTCTCTTGTGCTTCCTGGACCAGCTGGAAG
ATGGGGACGTGCAGACTCGAGTGGCCGGATGCCTGGCTTTGGGCTGTATCAAGGCTCCTGAGGGCATTGA
GCCCCTGGTGTACTTGTGCCAAACAGACACAGAAGCTGTGAGGGAAGCCGCCCGGCAGAGCCTGCAGCAG
TGCGGGGAGGAAGGACAGTCTGCTCATCGACAGCTAGAGGAGTCCCTGGATGCTCTGCCCTGCATCTTTG
GGCCCAGCAGCATGGCCAGCACAGCATTCTGA

Translation (1223 aa):
MMSLSVRPQRRLLSARVSRSQSFAGVLGSHERGPRSFTVFSPPGPPRKPLVLSRVSRMFSVAHPAPKVPQ
PERLDLVYTALKRGLTAYLEVHQQEQEKLQRQIKESKRNSRLGFLYDLDKQVKSIERFLRRLEFHASKID
ELYEAYCVQRRLRDGAYNMVRAYSTGSPGSREARDSLAEATRGHREYTESMCLLENELEAQLGEFHLRMK
GLAGFARLCVGDQYEICMKYGRQRWKLRGRIESSGKQVWDSEETVFLPLLTEFLSIKVTELKGLANHVVV
GSVSCETKDLFAALPQVVAVDINDLGTIKLSLEVIWSPFDKDDQPSAASTVNKASTVTKRFSTYSQSPPD
TPSLREQAFYNMLRRQEELENGTAWSLSSESSDDSSSPQLSGTARHSTPKPLVQQPEPLPVQVAFRRPES
LTSGSMDEEPAMTPSLVNGHAPYSRTLSHISEASVDAALTEAVEAVDSQSPIPGPSPLVYPDSTHVERVS
SVLPVLNNGHSATSPALSTTGPAPTFIDPAPTTQLDLVHKTTDSAPSELPSITHTTTSSAYSAVSLVNSV
PSLTSTTIGSAHTTTPSPLTSTGSVPNATDSTQATPSPTHSTPSPTHTTIRLTHTTVSPTHSSPSPIHTT
PSPTHTTVSPTCTTPSSGHSTTSPTQEAKMSTHTTGAVGPVQTTTSPISTTESPSPSTDVAIISSSSAES
TGPGTEPLPCSHPASPPYTKADPTASCTSYQSLASSGSKPLTSPAPDSPEQIPKSPSSSPSSSAPEPQHS
EHNLAAVAQAPVPEATGGAGDRRLEEALGTLMSALDDYRGQFPELQGLEQEVTRLESLLMQRQGLTRSRA
SSLSITVEHALESFSFLNDDEDEDNDGPGDRHTSSPEVVAEDRLDSSNGQSLSTGCSALDATLVQHLYHC
SRLLLKLGTFGPLRCQEAWALERLLREARVFQEVCERSKLWGNSATSAQEVVQFSASRPGFLTFWDQCTE
GLSPFICSVERVLLTFCSQYGARLSLRQPGLAEAVCVKFLEDALGQKLPRRPQPGPGEQFTIFQFWSYVE
ALDSPSMDAYVTETAEEVLLVQNLNSDDQAVVLKALRLAPEGRLRKDGLRALSSLLVHGNNKVMAAVSTQ
LRSLSLGPVFRERALLCFLDQLEDGDVQTRVAGCLALGCIKAPEGIEPLVYLCQTDTEAVREAARQSLQQ
CGEEGQSAHRQLEESLDALPCIFGPSSMASTAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH