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Report for CCDS52664.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52664.1 Public Mus musculus 8 Utp4 23 108 98 CCDS HistoryNCBI Gene:21771Re-query CCDS DB by CCDS ID:52664.1Re-query CCDS DB by GeneID:21771See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52664.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047629.6 ENSMUSP00000048377.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047629.6Link to Ensembl Protein Viewer:ENSMUSP00000048377.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000047629Re-query CCDS DB by Protein ID:ENSMUSP00000048377
Original member Current member NCBI NM_001358982.1 NP_001345911.1 Accepted alive Link to Nucleotide Sequence:NM_001358982.1Link to Protein Sequence:NP_001345911.1Re-query CCDS DB by Nucleotide ID:NM_001358982Re-query CCDS DB by Protein ID:NP_001345911Link to BLAST:NP_001345911.1
Original member Current member NCBI NM_011574.2 NP_035704.2 Accepted alive Link to Nucleotide Sequence:NM_011574.2Link to Protein Sequence:NP_035704.2Re-query CCDS DB by Nucleotide ID:NM_011574Re-query CCDS DB by Protein ID:NP_035704Link to BLAST:NP_035704.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345911.1 686 Q8R2N2 686 100% 0 0
NP_035704.2 686 Q8R2N2 686 100% 0 0

Chromosomal Locations for CCDS 52664.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 106894593 106894751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106898060 106898251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106898442 106898526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106900846 106900935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106904233 106904444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106906125 106906296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106906390 106906481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106908205 106908301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106910942 106911006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106912226 106912348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106913348 106913504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106916156 106916262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106917582 106917677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106918620 106918805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106922172 106922282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106922865 106922981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2061 nt):
ATGGGTGAATTTAAGGTCCATCGAGTACGTTTCTTTAATTACGTTCCATCAGGTATCCGGTGTGTGGCTT
ACAATAATCAGTCAAACAGATTGGCTGTTTCACGAACAGATGGCACGGTGGAAATTTATAACTTGTCAGC
AAACTATTTTCAGGAGAAATTTTTCCCAGGTCATGAGTCTCGGGGTACCGAAGCCCTGTGTTGGGCAGGA
GGACAGCGGCTCTTTAGTGCTGGACTGAACGGAGAAATCCTTGAGTATGACCTACAGGCACTAAACATCA
AGTACACTTTGGATGCCTTTGGAGGACCCATCTGGAGTATGACCGCCAGCCCCAGTGGCTCTCAACTTTT
GGTTGGTTGTGAAGATGGCTCCGTGAAACTATTTGAAGTCACCCCAGAAAAAATCCAGTTTGCAAGAAAT
TTTGATCGGCAAAAAAGTCGGATTCTCAGTCTCTGCTGGCACCCTGCGGGTACCCACGTCGCAGCTGGTT
CCTTAGACTACATTAGCGTGTTTGATGTCAAATCAGGGAGCATAATTCGTAAGATGGTTTTAGATAGGCA
ACACCTGGGAGTGACTAAGTCCAGGTGCATAGTGTGGGGTGTTGCCTTCTTGTCCGACGGCACTGTCATA
AGTGTGGACTCTGTTGGAAAGGTGCAGTTGTGGGACTCTGCTACTGGGACACTCGTTAAGAGTCATCTCG
TCGCAAATGCTGATGTGCAGTCTATTGCTGTTGCTGATCAAGAAGACAGTTTTGTGGTGGGCACCGCCGA
GGGCACGGTATTCCATTTCCAGCTGGTGTCCATGACTTCCAACAGCAGTGAGAAGCAGTGGGTGCGGACG
AAACCGTTCCAGCATCACACTCATGACGTGCGTGCTGTGGCCCACAGCCCAACAGCCCTGATCTCAGGAG
GCACCGACACCCACCTGGTTATTCGGCCTCTCATGGAGAGAGTGGAGGTAAAGAATTACGATGCTGCTCT
CCGAAAGATCACGTTCCCCCATCGGCGTCTCATTTCCTGTTCAAAAAGAAGGCAGCTTCTCCTTTTCCAG
TTCGCGCATCACTTGGAACTGTGGAGACTAGGATCCACATCTGCAACAGGCAAGAACGGAGATACTCTTC
CACTCTCTAAAAACGCAGATCATCTCCTGCACCTCAAGACAAAGGGCCCTGAGAACATTATCTGCAGCTG
TGTCTCCCCGTGTGGAAGCTGGATAGCCTATTCTACAGCGTCTCGCTTTTTTCTCTATCGATTGAAATAT
GAACGCGATAACATAAGCCTCCAAAGAGTTTCCAAATTGCCATCATTCCTGCGCTCTGCCCTTCATATTC
TGTTTTCTGAAGATTCAACAAAGCTCCTTGTGGCATCCAATCAAGGGTCTCTGCATATTGTTCATCTGTC
GGAAGGAAGCTTCAAGCACTTGCATACTTTCCAGCCGCAGTCAGGTACAGTGGAGGCCATGTGTCTTTTG
GCAGTCAGTCCAGATGGGAACTGGCTAGCTGCATCGGGTACCAGTGCTGGAGTCCACGTATATGATCTGC
ATCATCTAAAGCTTCACTGCACAGTGCCTGCTTACAACTTCCCAGTGACCGCTCTGGCCATCGCCCCCAA
TACCAACAACCTGGTCATTGCTCATTCTGACCAGCAGGTATTTGAATTCAGCATCCCAGAAAAGCAGTAT
ACAGAGTGGAGCCGCTCTCTCCAGAAGCAAGGATTTCACCAGCTGTGGCTCCAAAGGGATACTCCCATCA
CACACATCAGCTTTCATCCCAAGAGACCAATGCACATCCTCCTCCATGATGCCTACATGTTCTGCATCAT
TGACAAGTCATTGCCACTTCCAAATGAGAAAACTGTGCTTTATAATCCACTTCCTCCGAAAAATGAATCA
GATGTCTTCTTGAGGCGGACAACCCATGGGTTTAAAATGTCAAAGATATATAAGCCCTTGCTCTTTATGG
ATCTTTTGGATGAAAGGACACTTGTGGCAGTAGAGCGACCCCTGGACGACATCATTGCTCAACTCCCACC
ACCCATCAAAAAGAAGAAATTTGGAACTTAA

Translation (686 aa):
MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRGTEALCWAG
GQRLFSAGLNGEILEYDLQALNIKYTLDAFGGPIWSMTASPSGSQLLVGCEDGSVKLFEVTPEKIQFARN
FDRQKSRILSLCWHPAGTHVAAGSLDYISVFDVKSGSIIRKMVLDRQHLGVTKSRCIVWGVAFLSDGTVI
SVDSVGKVQLWDSATGTLVKSHLVANADVQSIAVADQEDSFVVGTAEGTVFHFQLVSMTSNSSEKQWVRT
KPFQHHTHDVRAVAHSPTALISGGTDTHLVIRPLMERVEVKNYDAALRKITFPHRRLISCSKRRQLLLFQ
FAHHLELWRLGSTSATGKNGDTLPLSKNADHLLHLKTKGPENIICSCVSPCGSWIAYSTASRFFLYRLKY
ERDNISLQRVSKLPSFLRSALHILFSEDSTKLLVASNQGSLHIVHLSEGSFKHLHTFQPQSGTVEAMCLL
AVSPDGNWLAASGTSAGVHVYDLHHLKLHCTVPAYNFPVTALAIAPNTNNLVIAHSDQQVFEFSIPEKQY
TEWSRSLQKQGFHQLWLQRDTPITHISFHPKRPMHILLHDAYMFCIIDKSLPLPNEKTVLYNPLPPKNES
DVFLRRTTHGFKMSKIYKPLLFMDLLDERTLVAVERPLDDIIAQLPPPIKKKKFGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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