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Report for CCDS52685.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52685.1 Public Mus musculus 8 6430548M08Rik 23 108 98 CCDS HistoryNCBI Gene:234797Re-query CCDS DB by CCDS ID:52685.1Re-query CCDS DB by GeneID:234797See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52685.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108951.7 ENSMUSP00000104579.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108951.7Link to Ensembl Protein Viewer:ENSMUSP00000104579.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108951Re-query CCDS DB by Protein ID:ENSMUSP00000104579
Original member Current member NCBI NM_001163761.1 NP_001157233.1 Accepted alive Link to Nucleotide Sequence:NM_001163761.1Link to Protein Sequence:NP_001157233.1Re-query CCDS DB by Nucleotide ID:NM_001163761Re-query CCDS DB by Protein ID:NP_001157233Link to BLAST:NP_001157233.1

Chromosomal Locations for CCDS 52685.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 120145335 120145663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120149292 120149391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120150084 120150157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120151311 120151381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120152439 120152634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120153431 120153471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120153922 120154000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120156297 120156374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120159959 120160039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120160318 120160412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120161215 120161264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGGAGGCCCCAGAAGTCCCTGTGGGCTCCCTGATTGACTTTGAGACTGAACCACCTACCTCCCCTCCTT
TGGAAGCAGCACCGTCAACGCTCCAGGACCCAGATGGCTCCCTGGGTGATGGTGCATCTGAGAGTGAGAC
CACCGAGTCCGCAGACAGTGAGAACGACATGGGCGAGTCACCTTCACACCCATCCTGGGACCAGGACCGA
CGCTCTTCCTCCAATGAGTCCTTCTCCTCCAATCAGAGTGCTGATTCCGCCCCAGATGAGGAGACCCTGG
CACTTCGAGAGTTTATGCGCAGCTACGTAGAGAAGATCTTCTCTGGAGGGGAGGACTTGGACCAGGAAGA
GAAAGCCAAGTTTGGGGAGTACTGCAGCGGAGAAGACGGGAAAGGCCGGGAATGGTTCGCACGCTTTGTG
AGCGCACAGCGCTGCAAGTCCAAGTGTGTGTCGGAGCCAACCTTCTACCGCCTGGTGCAGTCCTTCGCGG
TAGTGCTGTTTGAATGCCACCAGATGGACGACTTCGGGCCTGCCAAGAACCTCATGACCATGTGCTTCAC
TTACTACCATCTGGGCAAGCCCCAGCTGCCCCCGACAGAGCCCAGGGAGAAGCCAGCAGGCAGTATTGAC
TCCTACCTGAAGTCAGCCAACAGCTGGCTGGCAGAGAAGAAGGACATTGCCGAGCGGCTGCTGAAGAACA
CAGAGAACATGAAAGGCTTTTTCGGGGGGCTGGAGACCAAGCTGAAAGGACCGCTGGTCAGGAAAAATGA
GGAAGATGAGAACAAACCTAAGGACAGACAGACGAAGACTGTGACCATGATCAGCCCTGAGGATGAGCAG
AAGGGGGAGAAGGTTTACCTGTACACGCACCTGAGGCAGCAGCCCATCTGGCACACGCTGAGGTTCTGGA
ATGCTGCCTTTTTTGATGCTGTCCATTGTGAGAGGCGGAAGCGATCCCCCACCACCAGGGAGAAATGGTG
CCACATGACCCAGGAAGAACGGGATGACAGCCTGCGCTTCAACGAGAACATCACCTTCGGGCAGCTGGGC
ACGTTCACCCACAACATGCTGGCCTTTGGCTTGAACAAGAAGCTATGCAGCGACTTCCTGAAGAAGCAGG
CTGTGATTGGCAATCTAGATGAAGAGCAATACAAGCTGCTAAGTGACCACATCGAGCAAATGGCCACAGA
GTAG

Translation (397 aa):
MEAPEVPVGSLIDFETEPPTSPPLEAAPSTLQDPDGSLGDGASESETTESADSENDMGESPSHPSWDQDR
RSSSNESFSSNQSADSAPDEETLALREFMRSYVEKIFSGGEDLDQEEKAKFGEYCSGEDGKGREWFARFV
SAQRCKSKCVSEPTFYRLVQSFAVVLFECHQMDDFGPAKNLMTMCFTYYHLGKPQLPPTEPREKPAGSID
SYLKSANSWLAEKKDIAERLLKNTENMKGFFGGLETKLKGPLVRKNEEDENKPKDRQTKTVTMISPEDEQ
KGEKVYLYTHLRQQPIWHTLRFWNAAFFDAVHCERRKRSPTTREKWCHMTQEERDDSLRFNENITFGQLG
TFTHNMLAFGLNKKLCSDFLKKQAVIGNLDEEQYKLLSDHIEQMATE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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