NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52704.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52704.1 Public Mus musculus 8 Trim67 23 108 98 CCDS HistoryNCBI Gene:330863Re-query CCDS DB by CCDS ID:52704.1Re-query CCDS DB by GeneID:330863See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52704.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041106.8 ENSMUSP00000040601.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041106.8Link to Ensembl Protein Viewer:ENSMUSP00000040601.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041106Re-query CCDS DB by Protein ID:ENSMUSP00000040601
Original member Current member EBI ENSMUST00000167588.8 ENSMUSP00000130343.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167588.8Link to Ensembl Protein Viewer:ENSMUSP00000130343.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167588Re-query CCDS DB by Protein ID:ENSMUSP00000130343
Original member Current member EBI ENSMUST00000211867.1 ENSMUSP00000148625.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211867.1Link to Ensembl Protein Viewer:ENSMUSP00000148625.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211867Re-query CCDS DB by Protein ID:ENSMUSP00000148625
Original member Current member NCBI NM_198632.2 NP_941034.2 Accepted alive Link to Nucleotide Sequence:NM_198632.2Link to Protein Sequence:NP_941034.2Re-query CCDS DB by Nucleotide ID:NM_198632Re-query CCDS DB by Protein ID:NP_941034Link to BLAST:NP_941034.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941034.2 768 Q505D9 768 100% 0 0

Chromosomal Locations for CCDS 52704.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 124793901 124794905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124815070 124815165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124817004 124817126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124818698 124818808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124820188 124820341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124823122 124823267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124824718 124824856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124825935 124826238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124828099 124828261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124829020 124829085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2307 nt):
ATGGAGGAGGAGCTGAAGTGCCCAGTGTGCGGATCCCTGTTCCGGGAACCCATCATCCTGCCCTGCTCTC
ACAATGTCTGCTTGCCGTGCGCCCGCACTATCGCGGTTCAGACCCCGGACGGCGAGCAGCACCTGCCCCC
GCCGCTCCTTCTTTCGCGAGGTGCCGCCGCCGCCGCAACCCCTCCGGATCAGGACGCAGCCGCCGGCGCG
ACCAGCGGAGGCGCGGGAGCTAACACAGCCGGAGGCCTAGGCGGCGGGGCGACCGGTGGCGGAGACCACG
CGGACAAGCTGAGCTTGTACAGCGAGACTGACAGCGGCTATGGCTCCTACACCCCCAGCCTCAAGTCCCC
CAATGGAGTCCGCGTGCTGCCCATGGTGCCTGCGCCCCCGGGCTCTTCGGCCGCCGCGGCCCGAGGCGCC
GCCTGCTCCTCGCTCTGCTCGTCCTCCAGCTCCATCACCTGCCCGCAGTGCCACCGCAGCGCCTCCTTGG
ATCACCGCGGCCTGCGAGGCTTCCAGCGCAACCGGCTACTGGAGGGCATTGTGCAGCGGTACCAGCAGGG
CCGTGGGGTTGTTCCGGGGGCGGCTGCAGCCCCGGCGGTGGCCATCTGCCAGCTGTGCGACCGCACCCCA
CCGGAGCCGGCAGCCACTCTCTGCGAGCAATGCGACGTGCTCTATTGCGCCACCTGCCAGCTCAAGTGCC
ACCCGTCCCGGGGCCCCTTCGCTAAGCATCGGCTAGTTCAGCCACCGCCGCCGCCCACACCCCCAGAGGC
TACCCCTGCTGTTACAGGCACTTCCACTGCCTCCAGCGCAGGAGGATGCAGGAGCCCAGGGGGTGCCGGG
GCCAGCGCGCCGCGAAAGTTCCCCACATGTCCCGAGCACGAGATGGAGAACTACAGCATGTACTGCGTGA
GCTGTCGGAGCCCTGTGTGCTACATGTGCCTGGAGGAAGGCAGGCACAGCAAGCACGAGGTGAAGCCGCT
GGGGGCAACGTGGAAGCAGCACAAGGCCCAGCTGTCTCAGGCCTTAAATGGGGTTTCAGATAAGGCCAAA
GAGGCGAAGGAGTTTCTGGTTCAGCTCAAGAACATATTGCAGCAGATCCAGGAAAATGGACTGGACTATG
AAGCTTGCCTGGTGGCTCAGTGTGACGCCCTGGTGGATGCCCTGACTCGGCAGAAAGCCAAGCTGCTCAC
CAAGGTGACCAAAGAGAGGGAGCACAAGCTGAAGATGGTTTGGGACCAGATCAATCACTGCACCCTGAAG
CTACGCCAGTCCACGGGCCTGATGGAGTACTGCCTGGAGGTGATCAAGGAGGACGACCCCTCCGGGTTCC
TGCAGATCTCAGACGCCTTGATCAAGCGCGTGCAAACCTCGCAAGAGCAGTGGGTCAAAGGTGCCCTGGA
GCCCAAAGTATCTGCGGAATTTGACCTGACTCTGGACAGCGAGCCACTGCTGCAAGCCATCCACCAGCTG
GATTTCGTCCAGATGAAATTGCCACCTGTACCCCTGCTGCAGCTGGAGAAGTGCTGCACCCGCAACAACA
GCGTCACCCTGGCCTGGAGGACTCCGCCATTCACCCACAGCCCTGCCGAAGGCTACATCCTGGAGCTGGA
TGATGGCGATGGAGGGCAGTTCCGGGAGGTGTATGTTGGCAAGGAGACCCTGTGCACCATTGACGGGCTG
CACTTTAATAGCACCTACAATGCCAGAGTCAAAGCCTTCAACTCCTCTGGTGTTGGGCCCTACAGCAAGA
CTGTGGTCCTGCAGACCTCCGACGTGGCCTGGTTCACCTTTGACCCCAACTCTGGCCATCGGGACATCAT
CTTATCCAATGACAACCAGACGGCTACTTGCAGCAGCTATGATGACCGGGTGGTGCTAGGCACAGCTGCC
TTCTCCAAAGGCGTGCACTACTGGGAGCTGCACGTGGACCGCTATGACAACCACCCGGACCCAGCCTTCG
GAGTGGCCAGGGCCAGCGTGGTCAAAGATATGATGCTAGGCAAGGATGACAAGGCCTGGGCCATGTACGT
GGACAACAACCGCAGCTGGTTCATGCACTGTAACTCCCATACCAACAGGACTGAAGGCGGTGTGTGCAAG
GGGGCCACTGTGGGTGTGCTGCTGGACCTAAACAAACACACTCTGACCTTCTTCATCAATGGGCAACAGC
AGGGCCCCACAGCCTTCAGCCACGTGGATGGGGTCTTCATGCCTGCCCTCAGCCTCAACCGAAACGTGCA
GGTCACCCTGCACACAGGACTGGAGGTGCCAACAAACCTGGGACGGCCAAAGCTGTCAGGCAACTAG

Translation (768 aa):
MEEELKCPVCGSLFREPIILPCSHNVCLPCARTIAVQTPDGEQHLPPPLLLSRGAAAAATPPDQDAAAGA
TSGGAGANTAGGLGGGATGGGDHADKLSLYSETDSGYGSYTPSLKSPNGVRVLPMVPAPPGSSAAAARGA
ACSSLCSSSSSITCPQCHRSASLDHRGLRGFQRNRLLEGIVQRYQQGRGVVPGAAAAPAVAICQLCDRTP
PEPAATLCEQCDVLYCATCQLKCHPSRGPFAKHRLVQPPPPPTPPEATPAVTGTSTASSAGGCRSPGGAG
ASAPRKFPTCPEHEMENYSMYCVSCRSPVCYMCLEEGRHSKHEVKPLGATWKQHKAQLSQALNGVSDKAK
EAKEFLVQLKNILQQIQENGLDYEACLVAQCDALVDALTRQKAKLLTKVTKEREHKLKMVWDQINHCTLK
LRQSTGLMEYCLEVIKEDDPSGFLQISDALIKRVQTSQEQWVKGALEPKVSAEFDLTLDSEPLLQAIHQL
DFVQMKLPPVPLLQLEKCCTRNNSVTLAWRTPPFTHSPAEGYILELDDGDGGQFREVYVGKETLCTIDGL
HFNSTYNARVKAFNSSGVGPYSKTVVLQTSDVAWFTFDPNSGHRDIILSNDNQTATCSSYDDRVVLGTAA
FSKGVHYWELHVDRYDNHPDPAFGVARASVVKDMMLGKDDKAWAMYVDNNRSWFMHCNSHTNRTEGGVCK
GATVGVLLDLNKHTLTFFINGQQQGPTAFSHVDGVFMPALSLNRNVQVTLHTGLEVPTNLGRPKLSGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH