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Report for CCDS52735.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52735.1 Public Mus musculus 9 Qtrt1 23 108 98 CCDS HistoryNCBI Gene:60507Re-query CCDS DB by CCDS ID:52735.1Re-query CCDS DB by GeneID:60507See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52735.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002902.7 ENSMUSP00000002902.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002902.7Link to Ensembl Protein Viewer:ENSMUSP00000002902.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000002902Re-query CCDS DB by Protein ID:ENSMUSP00000002902
Original member Current member NCBI NM_021888.2 NP_068688.2 Accepted alive Link to Nucleotide Sequence:NM_021888.2Link to Protein Sequence:NP_068688.2Re-query CCDS DB by Nucleotide ID:NM_021888Re-query CCDS DB by Protein ID:NP_068688Link to BLAST:NP_068688.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068688.2 403 Q9JMA2 403 100% 0 0

Chromosomal Locations for CCDS 52735.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21411855 21412097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21412233 21412301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21412393 21412531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21417065 21417143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21417272 21417387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21418284 21418422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21419291 21419366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21419439 21419548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21419625 21419712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21420036 21420188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGGCGGCGGTAGGCAGCCCAGGTTCGCTTGAGTCCGCTCCACGAATAATGCGGCTGGTCGCTGAGTGCA
GTCGCTCCGGAGCTCGGGCGGGTGAGCTGCGGCTGCCGCATGGAACGGTAGCCACCCCTGTGTTCATGCC
TGTGGGTACACAGGCCACCATGAAGGGTATCACCACGGAGCAGCTGGACTCCCTGGGCTGCCGCATCTGC
TTGGGCAACACCTACCATCTGGGGCTGAGGCCGGGACCGGAGCTGATCCGGAAAGCCCAGGGTCTTCACG
GCTTCATGAATTGGCCCCACAATCTGCTGACGGATAGCGGCGGCTTCCAGATGGTGTCCCTCTTCTCCCT
GTCCGAGGTGACGGAGGAGGGCGTCCACTTCCGCTCGCCCTACGATGGAGAAGAGACACTTTTGAGCCCA
GAGAGGTCGGTGGAGATCCAGAATGCTCTGGGCTCGGACATCATCATGCAGTTAGACCATGTGGTGAGCA
GCACAGTGACAGGCCCTCTAGTGGAGGAGGCCATGCACAGGTCAGTCCGCTGGCTGGACAGATGCATCGC
AGCCCATAAGCACCCGGACAAGCAGAACCTCTTTGCCATCATCCAGGGTGGACTGAATGCTGATCTTCGG
ACCACTTGTCTGAAAGAGATGACCAAGAGAGATGTGCCGGGCTTCGCCATCGGAGGTCTGAGTGGAGGAG
AAAGCAAGGCACAGTTCTGGAAGATGGTGGCGTTGAGCACCTCCATGCTGCCTAAGGACAAGCCACGATA
CCTGATGGGGGTTGGCTATGCCACCGATTTGGTGGTCTGCGTGGCTCTTGGATGTGACATGTTCGACTGT
GTGTACCCCACACGGACAGCGCGCTTTGGATCCGCCCTTGTGCCCACTGGGAACCTTCAGTTGAAGAAGA
AGCAGTATGCCAAGGATTTCAGCCCCATAAACCCTGAGTGTCCCTGTCCCACCTGCCAGACGCACAGCCG
AGCCTTCCTGCATGCCCTGCTACACAGTGACAACACTACAGCACTACACCACCTAACCGTGCACAACATT
GCCTATCAGCTGCAGCTCCTGAGTGCCGTGCGCAGCAGTATCTTGGAACAGCGCTTTCCTGACTTTGTAC
GAAACTTCATGCGCACTATGTATGGTGACCACAGCCTCTGTCCTGCCTGGGCCGTTGAAGCACTGGCCTC
TGTGGGAATCATGCTCACATGA

Translation (403 aa):
MAAVGSPGSLESAPRIMRLVAECSRSGARAGELRLPHGTVATPVFMPVGTQATMKGITTEQLDSLGCRIC
LGNTYHLGLRPGPELIRKAQGLHGFMNWPHNLLTDSGGFQMVSLFSLSEVTEEGVHFRSPYDGEETLLSP
ERSVEIQNALGSDIIMQLDHVVSSTVTGPLVEEAMHRSVRWLDRCIAAHKHPDKQNLFAIIQGGLNADLR
TTCLKEMTKRDVPGFAIGGLSGGESKAQFWKMVALSTSMLPKDKPRYLMGVGYATDLVVCVALGCDMFDC
VYPTRTARFGSALVPTGNLQLKKKQYAKDFSPINPECPCPTCQTHSRAFLHALLHSDNTTALHHLTVHNI
AYQLQLLSAVRSSILEQRFPDFVRNFMRTMYGDHSLCPAWAVEALASVGIMLT


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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