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Report for CCDS52773.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52773.1 Public Mus musculus 9 Or8g50 23 108 98 CCDS HistoryNCBI Gene:258602Re-query CCDS DB by CCDS ID:52773.1Re-query CCDS DB by GeneID:258602See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52773.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078557.1 ENSMUSP00000077635.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078557.1Link to Ensembl Protein Viewer:ENSMUSP00000077635.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000078557Re-query CCDS DB by Protein ID:ENSMUSP00000077635
Original member Current member EBI ENSMUST00000217257.1 ENSMUSP00000150024.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217257.1Link to Ensembl Protein Viewer:ENSMUSP00000150024.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217257Re-query CCDS DB by Protein ID:ENSMUSP00000150024
Original member Current member NCBI NM_146609.2 NP_666820.2 Accepted alive Link to Nucleotide Sequence:NM_146609.2Link to Protein Sequence:NP_666820.2Re-query CCDS DB by Nucleotide ID:NM_146609Re-query CCDS DB by Protein ID:NP_666820Link to BLAST:NP_666820.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666820.2 312 Q60895 312 100% 0 0

Chromosomal Locations for CCDS 52773.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 39736817 39737755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGCATACAGCAATCAGTCCAGAGTGACTGAGTTCATCATCTCTGGGTTAACCAACAAACCAGAGCTGC
AGCTGCCCCTCTTCCTCCTCTTCCTTGGAATCTACCTGTTCACAGTGCTGGGGAACCTGGGCATGATCAT
CCTGATCCTGCTCAGCTCGCACCTGCACACCCCCATGTACTTCTTCCTCAGCAGCCTGTCCTTCATTGAC
CTCTGCTACTCCACAATAATCACCCCTAAAATGCTGGTGAACTTTGTGACAACAAAAAATGTCATCTCCT
ATCAGGAATGTATGACTCAGCTCTATTTCTTCATTGCTTTTGTTATATCTGAGTGTCACATGTTGGCTGC
AATGGCATATGACCGCTATGTCGCCATTTGTAATCCCTTGCTTTACAATGTCACCATGTCTTACCAAGTC
TGTTCCTGGATGGTAGGTGGGGTATATGGCATGGGCTTCATTGGTGCAGCAATTCATACTTTCTGCATGC
TAAGAGTGGTTTTCTGTAAGGATAATATAATAAACCATTACTTCTGTGATCTTTTCCCATTGATGGAGCT
TGCCTGCTCCAGTACTTATGTCAATGAGGTAGTACTCCTGTCTCTCAGTGCTTTCAATATCTTTATTCCA
ACATTGACTATCCTGGGTTCTTACATCTTCATCATTATTAGTATCCTCCGTATCAAATCCACTGAGGGCA
GATTCAAAGCCTTCAGCACATGTAGCTCCCACTTCTCTGCCGTTTCTGTCTTCTTTGGTTCCCTGGCATT
CATGTATCTGCAGCCCTTCTCTGTCAGCTCCAAAGACAAAGGCAAAGTGTCCTCTGTGTTTTACACTACT
ATTGTGCCCATGCTGAACCCTATGATCTACAGCCTGAGGAATAGGGATGTTAAACTTGCTCTAAATAAGT
TATTTCAAAAAAAGAAGTTTCATGTATAA

Translation (312 aa):
MAYSNQSRVTEFIISGLTNKPELQLPLFLLFLGIYLFTVLGNLGMIILILLSSHLHTPMYFFLSSLSFID
LCYSTIITPKMLVNFVTTKNVISYQECMTQLYFFIAFVISECHMLAAMAYDRYVAICNPLLYNVTMSYQV
CSWMVGGVYGMGFIGAAIHTFCMLRVVFCKDNIINHYFCDLFPLMELACSSTYVNEVVLLSLSAFNIFIP
TLTILGSYIFIIISILRIKSTEGRFKAFSTCSSHFSAVSVFFGSLAFMYLQPFSVSSKDKGKVSSVFYTT
IVPMLNPMIYSLRNRDVKLALNKLFQKKKFHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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