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Report for CCDS52776.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52776.1 Public Mus musculus 9 Mfrp 23 108 98 CCDS HistoryNCBI Gene:259172Re-query CCDS DB by CCDS ID:52776.1Re-query CCDS DB by GeneID:259172See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 52776.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161381.7 ENSMUSP00000124456.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161381.7Link to Ensembl Protein Viewer:ENSMUSP00000124456.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161381Re-query CCDS DB by Protein ID:ENSMUSP00000124456
Original member Current member NCBI NM_001190314.1 NP_001177243.1 Accepted alive Link to Nucleotide Sequence:NM_001190314.1Link to Protein Sequence:NP_001177243.1Re-query CCDS DB by Nucleotide ID:NM_001190314Re-query CCDS DB by Protein ID:NP_001177243Link to BLAST:NP_001177243.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177243.1 578 Q8K480-2 578 100% 0 0

Chromosomal Locations for CCDS 52776.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44101893 44101946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44102034 44102136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44102251 44102364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44102466 44102639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44102782 44102995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44103217 44103347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44103458 44103583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44103694 44103770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44104581 44104729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44105152 44105282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44105405 44105515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44106032 44106159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44106243 44106467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGAAGGACTATGACGACGTCATCCTCCGTCCAGAGGCGAGTGAGTTGAGCAAGACAGAGTTCTGTAATC
CT
GCTTTCGACCCGGAAGCAGGGCCATCCTGCCCTCCACCAGCGTTACAGAGGGATGTCGGCAGCCGGCT
C
CAAGCCCCCTGGCATGCCCAGCGTCTCCGGGGGCTACAGCCCGACTGCCACTTCTCCTGGTTCTGTATT
CTG
CTTCTCAGTGGCCTGCTGCTCCTGCTGCTGGGGCTACTGGTGGCTGTCATCCTGGCTCAGTTGCAGG
CT
ACATCCCTCCCCAGGACTACCAAGAACCCACTGCTCACCCGAGGCCTCACCCCCATGGGTGTCATTCC
C
AGCACCACCCCTAACACCACCACCACCACCACCACTACCACCCCAGCAAGGACAGGGCAGCAGGAGGCA
GCC
ATGAGCCCTACACACCAGACCACCTGTGGAGGCCTCCTTCCTGGTCCCAGTGGTTTCTTCAGCAGCC
CT
AACTACCCAGACCTCTACCCACCCCTCAGCCACTGTGTCTGGCATATCCAGGTAGCCGCGGGCCAGAC
A
ATACAGCTCAAGATTCAAGCCCTCAGCATAGAGAGTATGCTCACCTGTCTTTTTGATCGCTTGGAAATT
ATC
TCAGAGCCTACAGGCCCTCTCCTCAGGGTGTGTGGTAAAACACCTCCTGCCACATTAAACACCAATA
CC
AGCCACCTCCGTGTGTCCTTCGTCTCTGATAACGATGTGGAAGGGTCTGGTTTCCAGGCCTGGTACCA
A
GCAGTGGCCCCTGGACATTGGAGCTGTGCCCATAATGAGTTCCACTGTGACCTTCTCCTCTGCCTGAAG
CGT
GACTCTGTATGTGACGGTATTACCGAGTGTGCCGATGGCAGTGACGAGGCCAACTGCAGTGCCAAGA
CG
TTGGGGTGTGGAGGGAACCTGACTGGGCTCTATGGCGTATTCTCTACCCCAAACTATCCACAGCACTA
C
CCTCACCAACAGCTTTGCACCTGGTACATCGAAGTGCCTGTGGGATACGGGATAAGACTGGAGTTCCAC
AAC
TTCAGTCTGGAAGCACAGGCTGAGTGCAAGTTTGACTACGTGGAAGTGTACGAGGCCAGCAACCTGG
GA
ACCTTCAGCTTCCTGGGCAGGTTCTGTGGAGCAGAGCCACCACTCAACGTTGTCTCCTCGATGCACCA
G
CTGGCTGTAATCTTCAAGACGGATCTTGGTATCAGCAGCGGGGGCTTTCTAGCCACCTACCAGGCCATC
AAT
ACTACAGAGAAGTTCTGCCAGAGCGGAGGATATAGGGATCTGCAATGGATGTGTGACTTATGGAAAG
AC
TGTGCAAATGACAGCAACGACAACTGCAGCAGCCACTTGTCCCCACAACCAGACCTGACCTGTGAACC
T
GTCCAGGTGGAGATGTGCCTTGGACTAAGCTACAATACCACGGCCTTTCCTAACATCTGGGTGGGCCTG
GCC
ACGCAGACAGAGGTGACAGACATCCTCCGAGGCTACAAGAGTCTGACAAGTCTACCCTGCTACCAGA
CT
TTCCAGAGGTTCCTCTGTGGACTGCTTGTGCCTCGATGCACCTCACTGGGCACTATCCTACCCCCTTG
T
CGTTCCGTCTGCCAGGCGGCGGAGCAGCAGTGCCAGTCTAGCCTGGCATTATTGGGCACCCCCTGGCCT
TTC
AACTGCAACAGGCTGCCCGTGGCAGCTAGCCTGGAAGCTTGCTCCCAGCCCTGA


Translation (578 aa):
MKDYDDVILRPEASELSKTEFCNPAFDPEAGPSCPPPALQRDVGSRLQAPWHAQRLRGLQPDCHFSWFCI
L
LLSGLLLLLLGLLVAVILA
QLQATSLPRTTKNPLLTRGLTPMGVIPSTTPNTTTTTTTTTPARTGQQEA
A
MSPTHQT
TCGGLLPGPSGFFSSPNYPDLYPPLSHCVWHIQVAAGQTIQLKIQALSIESMLTCLFDRLEI
I
SEPTGPLL
RVCGKTPPATLNTNTSHLRVSFVSDNDVEGSGFQAWYQAVAPGHWSCAHNEFHCDLLLCLK
R
DSVCDGITECADGSDEANCSAKTL
GCGGNLTGLYGVFSTPNYPQHYPHQQLCTWYIEVPVGYGIRLEFH
N
FSLEAQAECKFDYVEVYEASNLGTFSFLG
RFCGAEPPLNVVSSMHQLAVIFKTDLGISSGGFLATYQAI
N
TTE
KFCQSGGYRDLQWMCDLWKDCANDSNDNCSSHLSPQPDLTCEPVQVEMCLGLSYNTTAFPNIWVGL
A
TQTEVTDILRGYK
SLTSLPCYQTFQRFLCGLLVPRCTSLGTILPPCRSVCQAAEQQCQSSLALLGTPWP
F
NCNRLPVAASLEACSQP




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser