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Report for CCDS52802.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52802.1 Public Mus musculus 9 Scaper 23 108 98 CCDS HistoryNCBI Gene:244891Re-query CCDS DB by CCDS ID:52802.1Re-query CCDS DB by GeneID:244891See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52802.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037408.8 ENSMUSP00000043411.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037408.8Link to Ensembl Protein Viewer:ENSMUSP00000043411.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000037408Re-query CCDS DB by Protein ID:ENSMUSP00000043411
Original member Current member EBI ENSMUST00000217647.1 ENSMUSP00000149750.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217647.1Link to Ensembl Protein Viewer:ENSMUSP00000149750.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217647Re-query CCDS DB by Protein ID:ENSMUSP00000149750
Original member Current member NCBI NM_001081341.2 NP_001074810.1 Accepted alive Link to Nucleotide Sequence:NM_001081341.2Link to Protein Sequence:NP_001074810.1Re-query CCDS DB by Nucleotide ID:NM_001081341Re-query CCDS DB by Protein ID:NP_001074810Link to BLAST:NP_001074810.1

Chromosomal Locations for CCDS 52802.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 55550768 55550871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55553471 55553522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55556085 55556276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55580207 55580356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55586219 55586453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55602766 55602921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55609842 55610074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55655905 55656028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55685880 55685995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55743543 55743669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55757993 55758058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55762228 55762364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55807013 55807120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55807606 55807758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55809102 55809183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55815361 55815503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55816654 55816809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55838120 55838260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55858081 55858192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55858408 55858525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55858999 55859074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55859748 55859918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55864386 55864604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55874645 55874904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55883847 55884004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55892172 55892288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55895282 55895382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55912040 55912234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55914900 55914970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55915987 55916104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55919524 55919529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4197 nt):
ATGATGGCTTCCTTCCAGCGCTCCAATAGTCATGACAAAGTGAGAAGAATTGTTGCTGAGGAGGGTCGTA
CCGCAAGAAACTTGATAGCTTGGAGTGTTCCACTAGAAAGCAAAGATGATGATGGAAAACCGAAATGTCA
AACTGGTGGAAAATCTAAGAGGACAATTCAAGGCACTCATAAAACCACTAAACAGAATACTGCAGTAGAA
TGTAAAATAACATCCACAACTGGAGAGAAGCATTTTGATAAAAGTCCTACAAAAACAAGGCACCCAAGAA
AAATTGACTTAAGAGCTCGCTACTGGGCATTTCTTTTTGACAATCTTCGCCGGGCAGTAGATGAAATCTA
TGTGACTTGTGAATCAGATCAGAGTGTGGTGGAGTGTAAGGAGGTGTTAATGATGCTGGATTACTATGTG
AGAGATTTCAAAGCATTGATTGACTGGATTCAACTTCAGGAAAAGTTAGAGAAGACAGATGCTCAAAGCA
GACCAACCTCACTGGCGTGGGAAGTAAAGAAGATGTCTCCAGGACGTCATGTGATTCAAAGCCCATCAAC
AGATAGAATGAATGTAACATCAACTGCAAGAAGAAGCTTAAACTTTGGGAGTTTACCTGGTGCAGTAACT
GCCCCATGTCTGGCTCCCACAGGTGTCAGTTGGGCTGACAAGGTAAAGGCTCATCATACTGGTTCTGCTC
CTCCTGAGGCCACACCTGCTCAATCCTGTGCACCAATGACAGTGCAAAAGACGTCCCGGAAAAATGAACG
GAAAGATGCTGAGGGTTGGGAGACTGTTCAGAGAGGTCGGCCAGTGCGTTCCCGATCGACAGCAGTTATA
CCTAAAGTTTCACTAGTGACAGAAACCTTAAGGTCAAAGGATGACAGTGATAAGGAAAACATATGCCTTT
TACCTGAAGAAAGCATACAGAAAGGAAAACTTGAAGACAGATGTTCTACTGTTGAATCGTTATCCAAAGA
CTCATTATTACATTCTTCTGACCATCCTCTTTCTGAGAGAACTCAGTTCACAGTGTGTATATTGGATGAT
GTCAAGAATTCTGGTAGTAGTCAAGACAGTTCAGTGCATACTTCTGAAATACCAGCTATTGACAGTGATG
CAGTATGTGTTGCTCCACAAAACACCACAGCTTTGCCAACAGACAGAGTTCCAGCGGAGACAACAGGAAT
GGTGACTGAGATGACGGACCCTTCAGACATTTCAAATGTGAGTGCTGCTGACTGGTCTATGGCAGAAGTT
CTCGCTAAAAAAGAAGAGCTAGCAGATCGTCTAGAAAAGGCCAATGAAGAAGCCATCGCCAGTGCTATTG
CTGAAGAAGAACAATTAACCAGAGAAATTGAAGCTGAAGAAAACAATGACATTAACATCGAGACTGACAA
CGACAGTGACTTTTCTGCCAGTATGGGCAGTGGGAGTCTATCTTTCTGTGGTGTGTCTCTGGACTGGAAT
GATGTTCTCGCAGATTATGAAGCTCGTGAATCATGGCGTCAAAATACATCCTGGGGAGATATTGTAGAAG
AGGAGCCTGCCAGACTTCCAGGGCATGGAATTCACATGCATGAAAAACTTTCATCACCTTCTCGTAAAAG
GACAATCGCAGAATCTAAAAAGAAATATGAAGAAAAACACATGAAAGCTCAACAGTTAAGGGAAAAGCTA
CGCGAAGAGAAGACACTAAAGCTTCAAAAGTTGTTAGAAAGGGAGAAAGATGTCCGAAAGTGGAAGGAAG
AATTACTAGATCAACGACGTAGGATGATGGAAGAGAAATTACTTCATGCAGAATTTAAACGAGAGGTACA
GCTACAAGCTATTGTGAAGAAAGCTCAAGAGGAAGAAGCTAAGGTTAATGAGATTGCCTTCATAAATACC
CTTGAAGCTCAGAATAAACGTCACGATGTTTTATCAAAACTGAAGGAATATGAGCAGAGGCTTAATGAAT
TGCAGGAAGAACGTCAGAGAAGACAAGAAGAAAAGCAAGCTCGTGATGAGGCTGTGCAGGAACGTAAGAG
AGCCTTGGAGGCAGAAAGGCAGGCCCGTGTAGAGGAATTATTGATGAAGAGGAAAGAGCAAGAAGCCCGA
ATTGAGCAACAGAGGCAAGAGAAGGAGAAAGCTCGTGAAGATGCAGCCCGGGAAAGAGCAAGAGACAGGG
AAGAACGGTTGGCAGCGCTCACAGCAGCTCAGCAAGAAGCTATGGAAGAGCTGCAGAAAAAAATTCAGCT
CAAGCATGATGAAAGCATTCGAAGGCACATGGAACAGATTGAGCAAAGGAAAGAAAAAGCTGCTGAATTA
AGCAGTGGGCGGCATGCAAGCACCGATTACGCCCCTAAACTGACCCCTTATGAAAGAAAGAAGCAGTGTT
CTCTCTGCAATGTCCTGATCGCTTCTGAAGTATATCTCTTTAGCCACATTAAAGGGAAAAAACATCAGCA
GGCTGTGAGAGAGAATAGCAGTATCCAGGGCCGTGAACTTTCTGATGAGGAAGTGGAACATCTGTCTTTG
AAGAAGTATGTTGTTGACATTGTGATTGAAAGTGCAGCTCCACCAGAGCCTGTAAAAGATGGAGAAGAAC
GGCAAAAGAATAAGAAAAAAGCTAAAAAGATAAAAGCACGGATGAACATCAGGGCGAAAGAATATGAGAA
TTTAGTGGAAACCAAAAATTCTGGCTCCGAGTCACCTTATAAAGCAAAGCTTCAGAGATTAACCAAAGAT
CTTGTAAAACAACTTCAAGTACAAGACAGTGGCTCTTGGGTAAATAATAAGGCTTCAGCTTTGGATCGGA
CCCTTGGTGAGATTGCTAGAATATTGGAGAAAGAGAATGTGCCAGATCAGATTTCGTTTCAAGTTGCTGG
TGGATTAACAGCCCTTGAAAACATCCTTCAAGTAGTGACTCCAGCCACAAACATGAACACGGTTTCACGA
ATTCCTCCTAAGTCTCTCTGCAATGCAATCAATGTTTACAGCCTCGCCTGCAATAACTGCTCAGAAAACT
GCACTGATGTTCTGTTTAGTAACAAGATTACCTTCTTAATGGACCTCCTGATACACCAATTGACGGTTTA
TGTTCCAGATGAAAATAATGCTGTTCTAGGAAGAAATACAAATAAACAAGTTTTTGAAGGCTTGACGACT
GGACTTCTCAGAGCTGGTGCTGTGGTTTTTAGCTGTCTGATTGCCAACCGACCAGATGGAAACAGCCGTC
CAGCTACACCAAAAATATCAACACAGGAAATGAAAAACAAACCCTCACAAGGTGATGCTTTTAACAGTCG
AGTGCAAGACCTTATCAGCTATGTGGTGAACATGGGTCTGATTGACAGACTGCATGGCTGCTTCCTCTCA
GTGCAAGGCCCAGTGGATGAGAATCCCAAAATGGCCACATTTCTGCAGCACGCCGCAGGCTTCCTACGTG
GGATGTGTATGCTATGCTTTGCTGTCACTGGAAGGTCCTCCAGCATATTTGACAATAATCACCAGGATCC
CACAGGGCTGACAGCTGCTCTTCAGGCCACAGACTTGGCTGGAGTTCTACATATGCTCTACTGTATCCTC
TTCCACGGCACCATCTCAGACGCCGGCACGAGTCCCAAGGACAGTTACACCCAGAACACCATCCAAGTAG
CCATTCAGAGTTTACGTTTCTTCAATAGCTTTGCAATTCTTGATTTGTCTGCTTTTCAGTCTGTTGTAGG
GGCAGAGGGCTTGTCCCTTGCATTCCGGCACATGGCTAGCTCCTTGCTAGGCCACTGCAGCCAAGTGTCC
TGTGAAAGCCTCCTCCATGAGGTCATCGTCTGTGTGGGCTACTTCACTGTCAACCACCCAGATAACCAGG
TGATTGTTCAGTCCGGCCGCCACCCAACGGTGCTGCAGAAGCTCTGCCAGCTGCCTTTCCAGTATTTCAG
TGACCCGAGGCTCATCAAAGTGCTGTTTCCTTCGCTTATCACCGCGTGTCACAACAACCATCAGAACAAG
CTCATTCTGGAGCAAGAGATGAGCTGTGTTTTACTGGCCACATTCATCCAGGACTTTGCACAGACTCCGG
GTCACGTGGATAACCAGTCTTCAAGTCTCAAAGGAAAATTCCAGAACCCCGGGAACTACCTGGAACTGGC
TAACAGATTTCCTCAGCAGGCCTGGGAAGAAGCCCGGCAATTTTTCTTGAAAAAAGAAAAAAAATAA

Translation (1398 aa):
MMASFQRSNSHDKVRRIVAEEGRTARNLIAWSVPLESKDDDGKPKCQTGGKSKRTIQGTHKTTKQNTAVE
CKITSTTGEKHFDKSPTKTRHPRKIDLRARYWAFLFDNLRRAVDEIYVTCESDQSVVECKEVLMMLDYYV
RDFKALIDWIQLQEKLEKTDAQSRPTSLAWEVKKMSPGRHVIQSPSTDRMNVTSTARRSLNFGSLPGAVT
APCLAPTGVSWADKVKAHHTGSAPPEATPAQSCAPMTVQKTSRKNERKDAEGWETVQRGRPVRSRSTAVI
PKVSLVTETLRSKDDSDKENICLLPEESIQKGKLEDRCSTVESLSKDSLLHSSDHPLSERTQFTVCILDD
VKNSGSSQDSSVHTSEIPAIDSDAVCVAPQNTTALPTDRVPAETTGMVTEMTDPSDISNVSAADWSMAEV
LAKKEELADRLEKANEEAIASAIAEEEQLTREIEAEENNDINIETDNDSDFSASMGSGSLSFCGVSLDWN
DVLADYEARESWRQNTSWGDIVEEEPARLPGHGIHMHEKLSSPSRKRTIAESKKKYEEKHMKAQQLREKL
REEKTLKLQKLLEREKDVRKWKEELLDQRRRMMEEKLLHAEFKREVQLQAIVKKAQEEEAKVNEIAFINT
LEAQNKRHDVLSKLKEYEQRLNELQEERQRRQEEKQARDEAVQERKRALEAERQARVEELLMKRKEQEAR
IEQQRQEKEKAREDAARERARDREERLAALTAAQQEAMEELQKKIQLKHDESIRRHMEQIEQRKEKAAEL
SSGRHASTDYAPKLTPYERKKQCSLCNVLIASEVYLFSHIKGKKHQQAVRENSSIQGRELSDEEVEHLSL
KKYVVDIVIESAAPPEPVKDGEERQKNKKKAKKIKARMNIRAKEYENLVETKNSGSESPYKAKLQRLTKD
LVKQLQVQDSGSWVNNKASALDRTLGEIARILEKENVPDQISFQVAGGLTALENILQVVTPATNMNTVSR
IPPKSLCNAINVYSLACNNCSENCTDVLFSNKITFLMDLLIHQLTVYVPDENNAVLGRNTNKQVFEGLTT
GLLRAGAVVFSCLIANRPDGNSRPATPKISTQEMKNKPSQGDAFNSRVQDLISYVVNMGLIDRLHGCFLS
VQGPVDENPKMATFLQHAAGFLRGMCMLCFAVTGRSSSIFDNNHQDPTGLTAALQATDLAGVLHMLYCIL
FHGTISDAGTSPKDSYTQNTIQVAIQSLRFFNSFAILDLSAFQSVVGAEGLSLAFRHMASSLLGHCSQVS
CESLLHEVIVCVGYFTVNHPDNQVIVQSGRHPTVLQKLCQLPFQYFSDPRLIKVLFPSLITACHNNHQNK
LILEQEMSCVLLATFIQDFAQTPGHVDNQSSSLKGKFQNPGNYLELANRFPQQAWEEARQFFLKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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