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Report for CCDS52814.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52814.1 Public Mus musculus 9 Rec114 23 108 98 CCDS HistoryNCBI Gene:73673Re-query CCDS DB by CCDS ID:52814.1Re-query CCDS DB by GeneID:73673See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52814.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098674.5 ENSMUSP00000096271.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098674.5Link to Ensembl Protein Viewer:ENSMUSP00000096271.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000098674Re-query CCDS DB by Protein ID:ENSMUSP00000096271
Original member NCBI NM_028598.1 NP_082874.1 Updated not alive Link to Nucleotide Sequence:NM_028598.1Link to Protein Sequence:NP_082874.1Re-query CCDS DB by Nucleotide ID:NM_028598Re-query CCDS DB by Protein ID:NP_082874
Current member NCBI NM_028598.2 NP_082874.1 Accepted alive Link to Nucleotide Sequence:NM_028598.2Link to Protein Sequence:NP_082874.1Re-query CCDS DB by Nucleotide ID:NM_028598Re-query CCDS DB by Protein ID:NP_082874Link to BLAST:NP_082874.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082874.1 259 Q9CWH4 259 100% 0 0

Chromosomal Locations for CCDS 52814.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 58652942 58653106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58657757 58657843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58660174 58660371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58665833 58665916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58712016 58712105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58741387 58741542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGTCTGAAGCGGGAAATGTGGCCTCCGGCCTCGGACTTCCAGGCGAAGTCTCCCAGTGGTCTCTGAAGC
GCTATGGTCGCTTCATGCTCTTGGACAACGTGGGGTCCCCTGGGCCTAGCTCGGAAGCTGCTGCAGCGGG
CTCGCCCACATGGAAGGTTTTTGAATCCAGTGAAGAATCCGGGAGTCTTGTCCTCACGATCGTTGTATCA
GGTCACTTCTTCATTTCCCAAGGGCAGACACTGCTGGAAGGGTTTTCACTCATTGGCAGCAAGAACTGGT
TGAAGATTGTAAGACGCATGGACTGTCTTCTGTTTGGAACAACAATAAAGAACAAGAGCCGAATGTTTCG
TGTCCAGTTTAGTGGGGAGTCCAAGGAAGAGGCGCTGGAGCGCTGCTGTGGCTGTGTGCAGACCCTGGCC
CAGTACGTCACCGTTCAGGAGCCTGACAGCACCACCCAGGAGCTTCAGCAGAGCCAAGGCCCCCGGGAGG
CAGGTGAAAGCCAAGGGAAGGACCCACTGCAGCAGGGGCCCTCCCTGACCCTGGAGCAGCACGTGTGTAT
GGCAGCTGGGGCAGGTGTTCTACAGGAAAGGACCTCAGTGACACATCGAGCTCAGTCTATCCTGGCGCCA
GAGAAGCTGACCCTCGCCTATGAAGGCTCTTCATGGGGAACAGAAGAATTGGGACCTTTTCTACGCTTAT
GTCTCATGGATCAAAACTTCCCAGCATTTGTGGAAGAGGTGGAAAAGGAACTTAAAAAGATTACAGGGTT
GAGAAACTAA

Translation (259 aa):
MSEAGNVASGLGLPGEVSQWSLKRYGRFMLLDNVGSPGPSSEAAAAGSPTWKVFESSEESGSLVLTIVVS
GHFFISQGQTLLEGFSLIGSKNWLKIVRRMDCLLFGTTIKNKSRMFRVQFSGESKEEALERCCGCVQTLA
QYVTVQEPDSTTQELQQSQGPREAGESQGKDPLQQGPSLTLEQHVCMAAGAGVLQERTSVTHRAQSILAP
EKLTLAYEGSSWGTEELGPFLRLCLMDQNFPAFVEEVEKELKKITGLRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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