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Report for CCDS52895.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52895.1 Public Mus musculus 9 Prr23a2 23 108 98 CCDS HistoryNCBI Gene:623186Re-query CCDS DB by CCDS ID:52895.1Re-query CCDS DB by GeneID:623186See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52895.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071302.2 ENSMUSP00000071270.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071302.2Link to Ensembl Protein Viewer:ENSMUSP00000071270.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000071302Re-query CCDS DB by Protein ID:ENSMUSP00000071270
Original member Current member NCBI NM_001134661.1 NP_001128133.1 Accepted alive Link to Nucleotide Sequence:NM_001134661.1Link to Protein Sequence:NP_001128133.1Re-query CCDS DB by Nucleotide ID:NM_001134661Re-query CCDS DB by Protein ID:NP_001128133Link to BLAST:NP_001128133.1

Chromosomal Locations for CCDS 52895.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 98856591 98857352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGCTGCGCACCAGGCCCCGCAGCCCCTGCGTCGACCCCGCGCCCTGCTGGTCACCTCAGACATCAGCAC
CCAGCCCTGCCAAGCGCCGCCGCCTCCACCAGGAGCCCGCGTGCCCAGAACCCCTGGCTCAGCCCGAGTT
GGAAGCGCCCGCAGAGCCCACCACCTCCGTGGTGTTCCTGGCCGCCGGCTCTGCCCTGCAGTTGCCCCTG
GATGGCATCGACCTGCTGTTGGAGCCTGAGCCCACCTCGGTCCTGCAAGTGTCGCTCCAAGGACACACCA
TCCTCCTGGTCCCCGAGGGACTCATGACACAACCCCAGCCAGGACAGCCTGGATTCGTGGCCATCAGCCC
ACAGGGAGCCGCTGCCCAGGACGGGCCCCAGGATCATCTAGTCGGTCTCCAGGAGGAAACCTGTGAGTAC
TTCTACCAAGAGGATGTCTGTAATGAGGATGCAGACTTGGAATTCCTGGAACCCTGGGCTAGGCCTCCAG
ATGATCAGGCCAATGGGAGCTTTTTCTCCATCCCAGGGGTGCCCAGTCCTTTGTTGCAGGAACAAGTCCC
AGGGCCTTCCACTGGAGCAGAGCGATATTCTCCTAGGTCCATCTGGGAACTGGACAGCTACCTGCTGGGA
CCCCTCCCTGGCTCACCACTGCAGCCTCTGCCTCCATCTCCTTCCCAGAGTCCCCAAGAGCAGCTTCCGC
CATGCCCTCCATGCTCTCCCCGGGCTCCTTGCAAGGCCCGGAAGCGACTGGTCTATGACTGA

Translation (253 aa):
MLRTRPRSPCVDPAPCWSPQTSAPSPAKRRRLHQEPACPEPLAQPELEAPAEPTTSVVFLAAGSALQLPL
DGIDLLLEPEPTSVLQVSLQGHTILLVPEGLMTQPQPGQPGFVAISPQGAAAQDGPQDHLVGLQEETCEY
FYQEDVCNEDADLEFLEPWARPPDDQANGSFFSIPGVPSPLLQEQVPGPSTGAERYSPRSIWELDSYLLG
PLPGSPLQPLPPSPSQSPQEQLPPCPPCSPRAPCKARKRLVYD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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