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Report for CCDS52902.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52902.1 Public Mus musculus 9 Cdv3 23 108 98 CCDS HistoryNCBI Gene:321022Re-query CCDS DB by CCDS ID:52902.1Re-query CCDS DB by GeneID:321022See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52902.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116517.8 ENSMUSP00000112216.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116517.8Link to Ensembl Protein Viewer:ENSMUSP00000112216.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116517Re-query CCDS DB by Protein ID:ENSMUSP00000112216
Original member NCBI NM_001134427.1 NP_001127899.1 Updated not alive Link to Nucleotide Sequence:NM_001134427.1Link to Protein Sequence:NP_001127899.1Re-query CCDS DB by Nucleotide ID:NM_001134427Re-query CCDS DB by Protein ID:NP_001127899
Current member NCBI NM_001134427.2 NP_001127899.1 Accepted alive Link to Nucleotide Sequence:NM_001134427.2Link to Protein Sequence:NP_001127899.1Re-query CCDS DB by Nucleotide ID:NM_001134427Re-query CCDS DB by Protein ID:NP_001127899Link to BLAST:NP_001127899.1

Chromosomal Locations for CCDS 52902.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 103356014 103356029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103356280 103356439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103359876 103360018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103363975 103363985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (330 nt):
ATGCAAATAAGTGAAAAGGAAGATGATGATAATGAGAAGAGAGAAGATCCAGGAGATAATTGGGAAGAAG
GTGGAGGTGGCAGTGGAGCAGAAAAATCTTCAGGTCCCTGGAATAAAACCGCTCCGGTACAAGCGCCTCC
TGCTCCAGTAACAGTTACAGAAACCCCGGAGCCAGCAATGCCCAGTGGTGTATACAGGCCTCCTGGGGCA
AGGCTAACCACAACAAGGAAAACGCCACAAGGACCACCAGAAATATACAGTGACACGCAGTTCCCATCCC
TGCAGTCCACTGCCAAGCATGTAGAGAGCCGGAACAGGTACTTAAAATGA

Translation (109 aa):
MQISEKEDDDNEKREDPGDNWEEGGGGSGAEKSSGPWNKTAPVQAPPAPVTVTETPEPAMPSGVYRPPGA
RLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESRNRYLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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