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Report for CCDS52917.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52917.1 Public Mus musculus 9 Cacna2d2 23 108 98 CCDS HistoryNCBI Gene:56808Re-query CCDS DB by CCDS ID:52917.1Re-query CCDS DB by GeneID:56808See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52917.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010210.12 ENSMUSP00000010210.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010210.12Link to Ensembl Protein Viewer:ENSMUSP00000010210.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000010210Re-query CCDS DB by Protein ID:ENSMUSP00000010210
Original member NCBI NM_001174050.1 NP_001167521.1 Updated not alive Link to Nucleotide Sequence:NM_001174050.1Link to Protein Sequence:NP_001167521.1Re-query CCDS DB by Nucleotide ID:NM_001174050Re-query CCDS DB by Protein ID:NP_001167521
Current member NCBI NM_001174050.2 NP_001167521.1 Accepted alive Link to Nucleotide Sequence:NM_001174050.2Link to Protein Sequence:NP_001167521.1Re-query CCDS DB by Nucleotide ID:NM_001174050Re-query CCDS DB by Protein ID:NP_001167521Link to BLAST:NP_001167521.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167521.1 1148 Q6PHS9-2 1148 100% 0 0

Chromosomal Locations for CCDS 52917.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 107400069 107400283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107426053 107426134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107465553 107465669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107497460 107497519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107505948 107505992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107509195 107509336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107512001 107512132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107512303 107512360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107513054 107513104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107513233 107513332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107513473 107513631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107513835 107513942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107514045 107514123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107514632 107514681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107514860 107514949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107515151 107515222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107515419 107515493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107517095 107517169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107517251 107517322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107517413 107517484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107517591 107517652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107518193 107518269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107522123 107522183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107524095 107524192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107524398 107524488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107524612 107524674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107524831 107524934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107525157 107525255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107525344 107525432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107525610 107525660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107525901 107525972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107526063 107526215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107526343 107526395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107526485 107526540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107526688 107526814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107526937 107527046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107527154 107527236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107527321 107527464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3447 nt):
ATGGCGGTGCCGGCTCGGACCTGCGGCGCTTCTTGGCCCGGCCCGGTGCGGACCGCTCGCCCCTGGCCCG
GTCGCGGCCCCCGGCCCTGCCCTGACCCCCGGGGCCCAGCGTCCGGGCCCGCACGCCCGCTCTTGCTCTT
GCTGCCGCCTCTGTTGCTTTTACCGCTGCTCACCGCCCCCGGCGCCTCTGCCTACAGCTTCCCCCAGCAG
CACACGATGCAGCACTGGGCCCGGCGCCTGGAGCAGGAGATTGACGGTGTGATGCGGATTTTTGGAGGCG
TGCAGCAGCTCCGAGAGATCTACAAGGACAATCGGAACCTGTTTGAAGTGCAGGAGAATGAACCACAGAA
ATTGGTGGAGAAAGTGGCAGGGGACATCGAGAGCCTGCTGGACAGGAAGGTCCAGGCCCTGAAGAGACTG
GCTGACGCTGCAGAGAATTTCCAGAAAGCCCATCGCTGGCAGGACAACATCAAGGAGGAAGACATCATGT
ACTACGATGCCAAGGCTGACGCCGAGCTGGATGACCCTGAGAGTGAAGATATGGAGAGGGGATCCAAGAC
CAGCGCCTTAAGGCTGGACTTCATCGAGGACCCAAACTTCAAGAACAAAGTCAACTATTCATACACGGCT
GTGCAGATCCCCACAGACATCTACAAAGGCTCTACCGTCATCCTCAATGAGCTTAACTGGACAGAGGCCC
TGGAGAACGTCTTCATTGAGAACCGTAGGCAAGACCCTACACTGTTGTGGCAAGTCTTTGGCAGTGCCAC
GGGAGTCACTCGCTATTACCCAGCCACACCATGGCGAGCCCCCAAGAAGATTGACCTGTACGATGTCAGA
AGACGACCCTGGTATATACAGGGGGCCTCATCACCCAAGGACATGGTCATCATTGTGGATGTGAGTGGCA
GCGTGAGCGGCCTGACTCTGAAGCTGATGAAGACGTCCGTCTGTGAGATGCTAGACACGCTCTCTGATGA
TGACTATGTGAACGTGGCCTCATTCAACGAGAAGGCGCAGCCTGTGTCTTGCTTCACACACCTGGTGCAG
GCCAATGTGCGTAACAAGAAGGTGTTCAAGGAAGCTGTGCAGGGCATGGTGGCCAAGGGCACCACAGGCT
ACAAGGCCGGCTTTGAGTATGCCTTTGACCAGCTACAGAATTCCAACATCACGCGGGCTAACTGCAATAA
GATGATCATGATGTTCACGGATGGGGGTGAGGATCGCGTGCAGGATGTCTTCGAAAAGTACAATTGGCCC
AATCGGACGGTACGTGTGTTCACGTTCTCCGTAGGACAGCATAACTATGATGTCACACCCTTGCAGTGGA
TGGCCTGTACTAACAAAGGTTACTATTTTGAGATCCCTTCCATCGGAGCCATCCGCATCAACACACAGGA
ATACCTGGATGTGCTGGGTAGGCCCATGGTACTGGCAGGCAAGGACGCCAAGCAAGTGCAATGGACAAAC
GTGTATGAAGATGCACTGGGGCTGGGGTTGGTGGTAACAGGAACTCTCCCTGTTTTCAACCTGACACAGG
ATGGCCCTGGGGAAAAGAAGAACCAGTTAATCCTGGGTGTCATGGGCATCGATGTGGCCTTGAATGACAT
CAAAAGGCTGACTCCCAACTACACACTCGGCGCCAATGGCTATGTGTTCGCCATCGACCTGAACGGCTAC
GTGTTGCTACATCCCAATCTCAAGCCCCAGACTACCAACTTCCGGGAGCCTGTGACCTTGGACTTCCTGG
ACGCAGAGCTGGAAGATGAGAACAAGGAGGAGATCCGTCGCAGCATGATTGACGGCGACAAAGGCCACAA
GCAGATCAGAACCTTGGTCAAATCCCTGGATGAGAGGTACATAGACGAAGTGATTCGGAACTACACCTGG
GTGCCTATAAGGAGTACCAACTACAGCCTGGGGCTGGTGCTCCCACCCTACAGCACCTACTACCTCCAAG
CCAACCTCAGCGACCAGATCCTGCAGGTCAAGTATTTTGAGTTCCTGCTTCCCAGCAGCTTTGAGTCTGA
AGGACACGTTTTCATTGCTCCGAGAGAGTATTGCAAGGACTTGAACGCCTCGGACAACAACACCGAGTTC
CTGAAGAACTTCATCGAGCTCATGGAGAAAGTGACTCCGGACTCCAAGCAGTGTAATAACTTCCTTCTTC
ATAACTTGATTCTGGACACGGGCATTACACAGCAGTTAGTGGAACGTGTGTGGCGGGACCAAGATCTCAA
CACGTACAGCCTGCTAGCCGTATTTGCTGCCACTGATGGTGGCATCACACGTGTCTTCCCGAACAAGGCA
GCCGAAGACTGGACAGAAAACCCTGAACCCTTCAATGCCAGCTTCTACCGTCGCAGCCTGGATAACCATG
GTTATATCTTCAAGCCCCCACACCAGGACTCCCTGTTAAGACCACTGGAGCTGGAGAATGACACAGTAGG
TGTCCTCGTCAGCACAGCTGTGGAGCTCAGTCTAGGTCGTCGCACACTGAGGCCAGCAGTGGTGGGTGTC
AAACTGGACCTAGAGGCTTGGGCTGAAAAGTTCAAGGTGCTGGCCAGCAACCGTACCCATCAGGACCAAC
CTCAGAAGCAGTGCGGCCCCAGCAGCCACTGTGAGATGGACTGCGAGGTTAACAACGAGGATCTACTCTG
TGTCCTCATTGATGACGGAGGGTTCCTGGTGCTGTCAAACCAGAACCATCAGTGGGACCAGGTTGGCAGA
TTCTTCAGTGAGGTGGATGCCAACCTGATGCTGGCACTGTACAATAACTCCTTCTACACCCGAAAGGAAT
CCTATGACTATCAGGCAGCCTGTGCCCCTCAGCCTCCTGGGAACCTGGGTGCTGCACCCCGGGGTGTCTT
TGTGCCCACCATTGCAGATTTCCTTAACTTGGCCTGGTGGACCTCTGCTGCCGCCTGGTCCTTATTCCAG
CAGCTACTCTATGGTCTCATCTATCACAGCTGGTTCCAGGCAGACCCGGCAGAAGCTGAGGGCAGCCCCG
AGACGCGCGAGAGCAGCTGCGTCATGAAACAGACCCAGTACTACTTCGGCTCGGTGAACGCATCCTATAA
TGCCATCATTGACTGCGGAAACTGCAGCAGGCTGTTCCATGCGCAGAGACTGACCAACACCAATCTCCTG
TTCGTGGTGGCCGAGAAGCCGCTGTGCAGCCAGTGCGAGGCGGGCCGGCTGCTGCAGAAGGAGACACACT
CGGACGGCCCGGAGCAGTGTGAGCTGGTGCAGAGACCGAGATACCGAAGAGGTCCGCACATCTGTTTTGA
CTACAATGCGACGGAAGATACCTCAGACTGTGGCCGCGGAGCCTCCTTCCCTCCGTCGCTGGGCGTCTTG
GTTTCCTTGCAGCTTTTGCTCCTCCTGGGCCTGCCACCTCGGCCGCAGCCTCAAGTCCACTCCTTCGCTG
CCTCTCGCCACCTCTGA

Translation (1148 aa):
MAVPARTCGASWPGPVRTARPWPGRGPRPCPDPRGPASGPARPLLLLLPPLLLLPLLTAPGASAYSFPQQ
HTMQHWARRLEQEIDGVMRIFGGVQQLREIYKDNRNLFEVQENEPQKLVEKVAGDIESLLDRKVQALKRL
ADAAENFQKAHRWQDNIKEEDIMYYDAKADAELDDPESEDMERGSKTSALRLDFIEDPNFKNKVNYSYTA
VQIPTDIYKGSTVILNELNWTEALENVFIENRRQDPTLLWQVFGSATGVTRYYPATPWRAPKKIDLYDVR
RRPWYIQGASSPKDMVIIVDVSGSVSGLTLKLMKTSVCEMLDTLSDDDYVNVASFNEKAQPVSCFTHLVQ
ANVRNKKVFKEAVQGMVAKGTTGYKAGFEYAFDQLQNSNITRANCNKMIMMFTDGGEDRVQDVFEKYNWP
NRTVRVFTFSVGQHNYDVTPLQWMACTNKGYYFEIPSIGAIRINTQEYLDVLGRPMVLAGKDAKQVQWTN
VYEDALGLGLVVTGTLPVFNLTQDGPGEKKNQLILGVMGIDVALNDIKRLTPNYTLGANGYVFAIDLNGY
VLLHPNLKPQTTNFREPVTLDFLDAELEDENKEEIRRSMIDGDKGHKQIRTLVKSLDERYIDEVIRNYTW
VPIRSTNYSLGLVLPPYSTYYLQANLSDQILQVKYFEFLLPSSFESEGHVFIAPREYCKDLNASDNNTEF
LKNFIELMEKVTPDSKQCNNFLLHNLILDTGITQQLVERVWRDQDLNTYSLLAVFAATDGGITRVFPNKA
AEDWTENPEPFNASFYRRSLDNHGYIFKPPHQDSLLRPLELENDTVGVLVSTAVELSLGRRTLRPAVVGV
KLDLEAWAEKFKVLASNRTHQDQPQKQCGPSSHCEMDCEVNNEDLLCVLIDDGGFLVLSNQNHQWDQVGR
FFSEVDANLMLALYNNSFYTRKESYDYQAACAPQPPGNLGAAPRGVFVPTIADFLNLAWWTSAAAWSLFQ
QLLYGLIYHSWFQADPAEAEGSPETRESSCVMKQTQYYFGSVNASYNAIIDCGNCSRLFHAQRLTNTNLL
FVVAEKPLCSQCEAGRLLQKETHSDGPEQCELVQRPRYRRGPHICFDYNATEDTSDCGRGASFPPSLGVL
VSLQLLLLLGLPPRPQPQVHSFAASRHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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