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Report for CCDS52951.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52951.1 Public Mus musculus 9 Tmppe 23 108 98 CCDS HistoryNCBI Gene:100504715Re-query CCDS DB by CCDS ID:52951.1Re-query CCDS DB by GeneID:100504715See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52951.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111820.3 ENSMUSP00000107451.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111820.3Link to Ensembl Protein Viewer:ENSMUSP00000107451.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111820Re-query CCDS DB by Protein ID:ENSMUSP00000107451
Original member Current member NCBI NM_001200002.1 NP_001186931.1 Accepted alive Link to Nucleotide Sequence:NM_001200002.1Link to Protein Sequence:NP_001186931.1Re-query CCDS DB by Nucleotide ID:NM_001200002Re-query CCDS DB by Protein ID:NP_001186931Link to BLAST:NP_001186931.1

Chromosomal Locations for CCDS 52951.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 114404635 114405978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGACGCTCTTCAGGCAGTTGTCGCTGGGCTCCAAGGCTGCCCTGGCTGCAGCCACGGTCTTCCTGTCCA
TGATCCTCTCCCGCTCCTTTCTGGCTGAGACCCTTGAGCTCCAGGCCTGGCGCTGGCTGTTCCGCCTGCA
GCTGATCCTGTTTGTAAACTCGATCATGCTCATTGGCTCCTCGTACATCTGGCGGAGCACCGTGAGCAAC
CTCAGCCATTCCCCTGCCGTGGAATCTACCTGTTTCCAGATTTGGAAGCTGGCTGTCATGGCGTTTCTGG
CCCTGGCACATTCCAGCTTCTTCACCATGCTCTTCTTGGTGGCCGAGGAACCCTACATGTTTTCCTTAAC
AGCCTACTCCTGCCTGGGTGCCTACATCATCATGGTCTTCTTCCTTTGTATCTTGAATGCCATGGAGCAG
GCCTACCAGTTCTTAGCCTGGCGCAGCGGTAGGGTGGTGGGCAGCCTGGACAAGACAAGGCACCTGGTGC
TCAGGCCTGCGCTGGCAGTGGCCGTGACGGCGGTGCTCAGTACCATTGGCCTTCTGAATGCTGCCCAGCC
CCCAGTGGTGAAAACCGTGGAGGTGCCCATCCATCAGCTGCCCGCCTCCATGGACAACCTCAAGATTGTG
CTCCTTTCTGACATTCACTTGGGGCCCACAGTGGGCAGGACCAAGATGGAGATGTTTGTGAGGATGGTGA
ACAGGCTAGAACCAGACATCACAGTGATCGTGGGCGACCTCTCCGACTCGGAAGCCTCTGTCCTGCGGAC
GGCAGTGGCTCCTTTGGGCCAGCTCCATTCCCGCCTTGGCACCTACTTCGTCACGGGTAATCACGAGTAC
TATACATCGGACGTCAGCAACTGGTTCACACTGCTGGAATCCTTGCACGTCCGGCCCCTACATAATGAGA
ATGTAAAGATTTCTGCCCCCGGGGACCCGGACAGTGCGGGGAGAGATAGAGAATGGGTCTGCTTAGCCGG
CGTGGATGACATAGAAGCAGACATCCTTCACTACTCTGGGCATGGCATGGACCTTGACAAGGCTCTGGAG
GGCTGCAGCCCAGACGATGCCACCATCTTACTGGCTCATCAGCCTCTGGCTGCCAAGAGAGCCCTCCAGG
CTCGGCCAGATATAAACTTGATCCTTTCTGGACACACTCACGCAGGGCAGATCTTCCCCTGGAATGTCGG
AGCCTATCTCCTGAACCCTTTCTTTGCTGGGCTCTACCAAGTGGGCAAGGCGACGTTTGTGTATGTTAGC
CCAGGTACAGCCTACTATGGGATACCCATGAGGTTGGGGAGCAGGGCAGAAATCACAGAGCTCATCCTGT
GGCGGCCTTCATAA

Translation (447 aa):
MTLFRQLSLGSKAALAAATVFLSMILSRSFLAETLELQAWRWLFRLQLILFVNSIMLIGSSYIWRSTVSN
LSHSPAVESTCFQIWKLAVMAFLALAHSSFFTMLFLVAEEPYMFSLTAYSCLGAYIIMVFFLCILNAMEQ
AYQFLAWRSGRVVGSLDKTRHLVLRPALAVAVTAVLSTIGLLNAAQPPVVKTVEVPIHQLPASMDNLKIV
LLSDIHLGPTVGRTKMEMFVRMVNRLEPDITVIVGDLSDSEASVLRTAVAPLGQLHSRLGTYFVTGNHEY
YTSDVSNWFTLLESLHVRPLHNENVKISAPGDPDSAGRDREWVCLAGVDDIEADILHYSGHGMDLDKALE
GCSPDDATILLAHQPLAAKRALQARPDINLILSGHTHAGQIFPWNVGAYLLNPFFAGLYQVGKATFVYVS
PGTAYYGIPMRLGSRAEITELILWRPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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