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Report for CCDS52968.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52968.1 Public Mus musculus 9 Zbtb47 23 108 98 CCDS HistoryNCBI Gene:270210Re-query CCDS DB by CCDS ID:52968.1Re-query CCDS DB by GeneID:270210See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52968.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093772.3 ENSMUSP00000091286.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093772.3Link to Ensembl Protein Viewer:ENSMUSP00000091286.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000093772Re-query CCDS DB by Protein ID:ENSMUSP00000091286
Original member Current member NCBI NM_001166644.1 NP_001160116.1 Accepted alive Link to Nucleotide Sequence:NM_001166644.1Link to Protein Sequence:NP_001160116.1Re-query CCDS DB by Nucleotide ID:NM_001166644Re-query CCDS DB by Protein ID:NP_001160116Link to BLAST:NP_001160116.1

Chromosomal Locations for CCDS 52968.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 121760223 121760225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121762619 121764121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121765483 121765630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121766467 121766582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121767239 121767383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121767495 121767769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2190 nt):
ATGTTGCTGGTTGAGAAGACGACAGACTCCCCGGCGGCAGAGTTCTCGCTGGTGGAGGACGTGGCCCTGC
ACTTCGCCTGCTTGATGGGCCGCCTCAATGAGCAGCGCCTCTTCCAGCCAGACCTGTGCGATGTGGACCT
AGTGCTGGTGCCTCAGCATAGCGTGTTCCCCGCACACAAGGGTGTGCTGGCCGCCTACAGCCAGTTCTTC
CACTCGCTCTTCACACAGAACAAGCAGCTGCAGCGGGTCGAGCTATCTCTGGAGGCACTCGCGCCCAGCG
GCCTGCAGCAGATCCTCAACTTCATCTACACGTCCAAGCTGCTCGTGAACGCGGCCAACGTGCACGAGGT
GCTCAGCGCGGCCTCGCTGCTGCAGATGGCTGACATCGCGGCCTCCTGCCAGGAGCTGCTGGACGCTCGA
TCCTTGGCGCCCTCGGGCCCTGTGGCCCTGGCACAGCCTGCCACCAGCTGTGCTCCGGTGCCTCCACCAC
CCTACTACTGTGACATCAAGCAGGAGGCAGATGCCCCAGGCCTCCCAAAGATCTATGCCCGGGAGGGCCC
CGATCCCTACTCTGTGCGTGTGGAGGATGGAGCAGGGGCTGCTGGGGATGTAGGCTCTGCCACTGCTGGG
CCAGCACAGACACTCTTCAAGGAGGAGAAGGAAGGGGCCCCTGAAGAGGCAGAGGCCCCAGGTAGCCTGT
GCAAACTGGAAAGTGGAGAGGGGCTGGAGCCAGAACTGGATGCCTCGGGCACCTATGGGCACCAGGAGCA
GTCACAAATCATTGTTGAGGTGAACCTTAACAACCAAACACTGCATGTGTCCACCGGACCCGAGGGCAAG
CCAGGCTCTGGTGCCAATCCAGCCACTGTGGTGCTCGGCCAGGAGGATGGCATGCAGGGACACTCGGAAG
AAGAGGAGGAGGAAGGAGGAGGGAGTGGAGGGGGAGAGGAAGAGGAGGAAGAGGAAGAAGAAGAGGAAGG
CAGCCAGGGAGAGGAGGAGGAGGAAGAGGAGGAAGGGCCCAGCGATCATCGAGAGGATGAGGATGAAGAA
GATGGGCCCAGTGAGCAGGATGCAGAGAGTTCTGAGGAGGAGAGGGAGGCTGAGGGCAGGCAGGACCCCG
CAGGTCCCGCTGGGTGTCAGGGCAGCCAGGTGGACCCTCCACCACATAGCCGAATGTCCACACGGTCCCG
GGGACAGAACACCCGGCGCCGGGCCACCCCTGAGCCAGAGGAGGCTGGACGTAGAGGTGGGAAGAGGCCC
AAGGCCTCTGGAGCTGTTCCGGCATCCCAGGCAGCTGACGGGCTGGGGGCCAAGGTGAAGCTGGAGGAAA
AACAGCAGCATCCGTGCCAGAAGTGCCCTCGGGTCTTCAACAACCGCTGGTACCTAGAAAAGCATATGAA
CGTGACCCACAGCCGGATGCAGATCTGTGGCCAGTGTGGGAAGCGCTTCCTGCTGGAGAGTGAGCTGCAG
CTGCACAGACAGACGGACTGTGAGCGCAACATCCAGTGCATGACATGTGGCAAAGCCTTCAAGAAACTGT
GGTCTCTTCATGAGCACAACAAGATAGTGCACGGCTACGCGGAGAAGAAGTTCTCCTGTGAGATCTGCGA
GAAGAAGTTTCACACCATGGCGCACGTGCGCAAGCACATGGTTGCCCACACCAAGGACATGCCCTTCACC
TGTGAGACCTGTGGGAAGTCCTTCAAGCGCAGTATGTCGCTGAAGGTCCACTCGCTGCAGCACTCGGGGG
AGAAACCTTTCCGCTGTGAGAACTGCAACGAACGCTTCCAGTACAAGTACCAGCTGCGGTCACACATGAG
CATCCACATTGGCCACAAGCAGTTCATGTGTCAGTGGTGTGGCAAGGACTTCAACATGAAGCAGTACTTT
GACGAGCACATGAAGACACACACAGGGGAGAAGCCTTATATCTGTGAGATCTGTGGCAAGAGTTTCACCA
GCCGCCCCAATATGAAGCGGCATCGACGCACACACACAGGAGAGAAGCCATACCCGTGTGACGTGTGCGG
CCAGCGTTTCCGCTTCTCCAACATGCTGAAGGCACACAAAGAAAAGTGCTTCCGTGTCAGCCACCCGCTG
CCCGGTGACCCCGCCACCCTGCCTGCCACGCATCTGCAGCCCACAGCTCCGCTCTTCCCCACAGCACCTC
CCAGGCTGGACACTAACTGA

Translation (729 aa):
MLLVEKTTDSPAAEFSLVEDVALHFACLMGRLNEQRLFQPDLCDVDLVLVPQHSVFPAHKGVLAAYSQFF
HSLFTQNKQLQRVELSLEALAPSGLQQILNFIYTSKLLVNAANVHEVLSAASLLQMADIAASCQELLDAR
SLAPSGPVALAQPATSCAPVPPPPYYCDIKQEADAPGLPKIYAREGPDPYSVRVEDGAGAAGDVGSATAG
PAQTLFKEEKEGAPEEAEAPGSLCKLESGEGLEPELDASGTYGHQEQSQIIVEVNLNNQTLHVSTGPEGK
PGSGANPATVVLGQEDGMQGHSEEEEEEGGGSGGGEEEEEEEEEEEGSQGEEEEEEEEGPSDHREDEDEE
DGPSEQDAESSEEEREAEGRQDPAGPAGCQGSQVDPPPHSRMSTRSRGQNTRRRATPEPEEAGRRGGKRP
KASGAVPASQAADGLGAKVKLEEKQQHPCQKCPRVFNNRWYLEKHMNVTHSRMQICGQCGKRFLLESELQ
LHRQTDCERNIQCMTCGKAFKKLWSLHEHNKIVHGYAEKKFSCEICEKKFHTMAHVRKHMVAHTKDMPFT
CETCGKSFKRSMSLKVHSLQHSGEKPFRCENCNERFQYKYQLRSHMSIHIGHKQFMCQWCGKDFNMKQYF
DEHMKTHTGEKPYICEICGKSFTSRPNMKRHRRTHTGEKPYPCDVCGQRFRFSNMLKAHKEKCFRVSHPL
PGDPATLPATHLQPTAPLFPTAPPRLDTN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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