NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52988.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52988.1 Public Mus musculus X Rbm3 23 108 98 CCDS HistoryNCBI Gene:19652Re-query CCDS DB by CCDS ID:52988.1Re-query CCDS DB by GeneID:19652See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52988.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115615.8 ENSMUSP00000111277.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115615.8Link to Ensembl Protein Viewer:ENSMUSP00000111277.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115615Re-query CCDS DB by Protein ID:ENSMUSP00000111277
Original member Current member EBI ENSMUST00000115619.7 ENSMUSP00000111282.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115619.7Link to Ensembl Protein Viewer:ENSMUSP00000111282.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115619Re-query CCDS DB by Protein ID:ENSMUSP00000111282
Original member Current member EBI ENSMUST00000115621.8 ENSMUSP00000111284.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115621.8Link to Ensembl Protein Viewer:ENSMUSP00000111284.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115621Re-query CCDS DB by Protein ID:ENSMUSP00000111284
Original member Current member NCBI NM_001166410.2 NP_001159882.1 Accepted alive Link to Nucleotide Sequence:NM_001166410.2Link to Protein Sequence:NP_001159882.1Re-query CCDS DB by Nucleotide ID:NM_001166410Re-query CCDS DB by Protein ID:NP_001159882Link to BLAST:NP_001159882.1
Original member Current member NCBI NM_001166411.2 NP_001159883.1 Accepted alive Link to Nucleotide Sequence:NM_001166411.2Link to Protein Sequence:NP_001159883.1Re-query CCDS DB by Nucleotide ID:NM_001166411Re-query CCDS DB by Protein ID:NP_001159883Link to BLAST:NP_001159883.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159882.1 153 O89086 153 100% 0 0
NP_001159883.1 153 O89086 153 100% 0 0

Chromosomal Locations for CCDS 52988.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 8143272 8143329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8143658 8143751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8143848 8143947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8144573 8144679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8144955 8145057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (462 nt):
ATGTCGTCTGAAGAAGGGAAACTCTTCGTAGGAGGGCTCAACTTCAACACCGATGAACAGGCACTTGAAG
ACCACTTCAGCAGCTTTGGGCCTATCTCTGAGGTGGTTGTTGTCAAGGACCGGGAGACTCAAAGATCCCG
GGGTTTTGGCTTCATCACCTTCACAAACCCAGAGCATGCCTCAGATGCGATGAGAGCTATGAATGGAGAG
TCCCTGGATGGGCGCCAAATCCGAGTTGATCATGCAGGAAAGTCTGCCAGGGGATCCAGAGGGGGTGCCT
TTGGTGGGCGTGGTCGCAGTTACTCTAGAGGTGGTGGAGACCAGGGATATGGAAGTGGAAGATATGACAG
TCGTCCTGGAGGATATGGATATGGGTATGGGCGGTCTAGAGACTACAGTGGCAGCCAGGGTGGCTATGAC
CGCTACTCAGGAGGAAATTACAGAGACAATTATGACAACTGA

Translation (153 aa):
MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGE
SLDGRQIRVDHAGKSARGSRGGAFGGRGRSYSRGGGDQGYGSGRYDSRPGGYGYGYGRSRDYSGSQGGYD
RYSGGNYRDNYDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH