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Report for CCDS52998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52998.1 Public Mus musculus X H2al1o 23 108 98 CCDS HistoryNCBI Gene:333452Re-query CCDS DB by CCDS ID:52998.1Re-query CCDS DB by GeneID:333452See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52998.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079952.3 ENSMUSP00000078870.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079952.3Link to Ensembl Protein Viewer:ENSMUSP00000078870.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000079952Re-query CCDS DB by Protein ID:ENSMUSP00000078870
Original member Current member NCBI NM_001085517.2 NP_001078986.1 Accepted alive Link to Nucleotide Sequence:NM_001085517.2Link to Protein Sequence:NP_001078986.1Re-query CCDS DB by Nucleotide ID:NM_001085517Re-query CCDS DB by Protein ID:NP_001078986Link to BLAST:NP_001078986.1

Chromosomal Locations for CCDS 52998.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 9572016 9572348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (333 nt):
ATGGCCAGGAAAATGCAAAGGCGAAGAAGACAGAAAAGAACCTGCTCCCAGAGAGGTGAGCTTCCTCTTA
GCCTTGTAGATCATTTCCTACGAGAGGAAATCCATTCCAGTCGCCTGAGCTCTTCCACACTTTCATTCCT
CACGAGTGTGCTCGAGTACTTAACATCGAACATCCTTGAACTGGCTGGTGAGGTGGCCCACACCACTGGC
AGGAAGCGCATAGCTCCAGAGGATGTACGTCTGGTGGTACAGAACAACGAACAGCTCCACCAACTCTTCA
AACCAGGTGGCACATCAGTGAATGAGCCACCAGAACCTGATAACAACGGATGA

Translation (110 aa):
MARKMQRRRRQKRTCSQRGELPLSLVDHFLREEIHSSRLSSSTLSFLTSVLEYLTSNILELAGEVAHTTG
RKRIAPEDVRLVVQNNEQLHQLFKPGGTSVNEPPEPDNNG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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