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Report for CCDS5309.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5309.2 Public Homo sapiens 6 PHF10 24 110 108 CCDS HistoryNCBI Gene:55274Re-query CCDS DB by CCDS ID:5309.2Re-query CCDS DB by GeneID:55274See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 5309.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 5309.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366780.8 ENSP00000355743.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366780.8Link to Ensembl Protein Viewer:ENSP00000355743.4Re-query CCDS DB by Nucleotide ID:ENST00000366780Re-query CCDS DB by Protein ID:ENSP00000355743
Original member Current member NCBI NM_133325.3 NP_579866.2 Accepted alive Link to Nucleotide Sequence:NM_133325.3Link to Protein Sequence:NP_579866.2Re-query CCDS DB by Nucleotide ID:NM_133325Re-query CCDS DB by Protein ID:NP_579866Link to BLAST:NP_579866.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_579866.2 496 Q8WUB8-2 496 100% 0 0

Chromosomal Locations for CCDS 5309.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 169704003 169704088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 169705133 169705321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 169705616 169705724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 169710236 169710391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 169712386 169712539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 169714733 169714842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 169715708 169715857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 169715955 169716088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 169717823 169717900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 169718788 169718918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 169721005 169721111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 169723845 169723931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGGCGGCGGCGGCCGGGCCCGGGGCTGCGCTGTCCCCGCGGCCGTGCGACAGCGACCCAGCCACCCCCG
GAGCGCAGTCCCCGAAGGATGATAATGAAGATAATTCAAATGATGGGACCCAGCCATCCAAAAGGAGGCG
AATGGGCTCAGGAGATAGTTCTAGGAGTTGTGAAACTTCAAGTCAAGATCTTGGTTTTAGTTACTATCCA
GCAGAAAACTTGATAGAGTACAAATGGCCACCTGATGAAACAGGAGAATACTATATGCTTCAAGAACAAG
TCAGTGAATATTTGGGTGTGACCTCCTTTAAAAGGAAATATCCAGAGCGACGAGATTTGTCTCACAAGGA
GAAACTCTACCTGAGAGAGCTAAATGTCATTACTGAAACTCAGTGCACTCTAGGCTTAACAGCATTGCGC
AGTGATGAAGTGATTGATTTAATGATAAAAGAATATCCAGCCAAACATGCTGAGTATTCTGTTATTCTAC
AAGAAAAAGAACGTCAACGAATTACAGACCATTATAAAGAGTATTCCCAAATGCAACAACAGAATACTCA
GAAAGTTGAAGCCAGTAAAGTGCCTGAGTATATTAAGAAAGCTGCCAAAAAAGCAGCAGAATTTAATAGC
AACTTAAACCGGGAACGCATGGAAGAAAGAAGAGCTTATTTTGACTTGCAGACACATGTTATCCAGGTAC
CTCAAGGGAAGTACAAAGTTTTGCCAACAGAGCGAACAAAGGTCAGTTCTTACCCAGTGGCTCTCATCCC
CGGACAGTTCCAGGAATATTATAAGAGGTACTCACCAGATGAGCTGCGGTATCTGCCATTAAACACAGCC
CTGTATGAGCCCCCTCTGGATCCTGAGCTCCCTGCTCTAGACAGTGATGGTGATTCAGATGATGGCGAAG
ATGGTCGAGGTGATGAGAAACGGAAAAATAAAGGCACTTCGGACAGCTCCTCTGGCAATGTATCTGAAGG
GGAAAGCCCTCCTGACAGCCAGGAGGACTCTTTCCAGGGAAGACAGAAATCAAAAGACAAAGCTGCCACT
CCAAGAAAAGATGGTCCCAAACGTTCTGTACTGTCCAAGTCAGTTCCTGGGTACAAGCCAAAGGTCATTC
CAAATGCTATATGTGGAATTTGTCTGAAGGGTAAGGAGTCCAACAAGAAAGGAAAGGCTGAATCACTTAT
ACACTGCTCCCAATGTGAGAATAGTGGCCATCCTTCTTGCCTGGATATGACAATGGAGCTTGTTTCTATG
ATTAAGACCTACCCATGGCAGTGTATGGAATGTAAAACATGCATTATATGTGGACAACCCCACCATGAAG
AAGAAATGATGTTCTGTGATATGTGTGACAGAGGTTATCATACTTTTTGTGTGGGCCTTGGTGCTATTCC
ATCAGGTCGCTGGATTTGTGACTGTTGTCAGCGGGCCCCCCCAACACCCAGGAAAGTGGGCAGAAGGGGG
AAAAACAGCAAAGAGGGATAA

Translation (496 aa):
MAAAAGPGAALSPRPCDSDPATPGAQSPKDDNEDNSNDGTQPSKRRRMGSGDSSRSCETSSQDLGFSYYP
AENLIEYKWPPDETGEYYMLQEQVSEYLGVTSFKRKYPERRDLSHKEKLYLRELNVITETQCTLGLTALR
SDEVIDLMIKEYPAKHAEYSVILQEKERQRITDHYKEYSQMQQQNTQKVEASKVPEYIKKAAKKAAEFNS
NLNRERMEERRAYFDLQTHVIQVPQGKYKVLPTERTKVSSYPVALIPGQFQEYYKRYSPDELRYLPLNTA
LYEPPLDPELPALDSDGDSDDGEDGRGDEKRKNKGTSDSSSGNVSEGESPPDSQEDSFQGRQKSKDKAAT
PRKDGPKRSVLSKSVPGYKPKVIPNAICGICLKGKESNKKGKAESLIHCSQCENSGHPSCLDMTMELVSM
IKTYPWQCMECKTCIICGQPHHEEEMMFCDMCDRGYHTFCVGLGAIPSGRWICDCCQRAPPTPRKVGRRG
KNSKEG


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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