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Report for CCDS53133.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53133.1 Public Mus musculus X Mageb5 23 108 98 CCDS HistoryNCBI Gene:74271Re-query CCDS DB by CCDS ID:53133.1Re-query CCDS DB by GeneID:74271See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53133.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082048.2 ENSMUSP00000080706.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082048.2Link to Ensembl Protein Viewer:ENSMUSP00000080706.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000082048Re-query CCDS DB by Protein ID:ENSMUSP00000080706
Original member Current member NCBI NM_028847.1 NP_083123.1 Accepted alive Link to Nucleotide Sequence:NM_028847.1Link to Protein Sequence:NP_083123.1Re-query CCDS DB by Nucleotide ID:NM_028847Re-query CCDS DB by Protein ID:NP_083123Link to BLAST:NP_083123.1

Chromosomal Locations for CCDS 53133.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 91779671 91780771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGCCCAGGGGTCAGAAGAATAAGCACCACCGCAACCGCTTGAAGAATAAGAAACACAACCAAGAGAAAG
TCCATCCTCAAAAAGATGAGTCTCAGGAGAAAGGCCATCATAAAAGAGATGATTTTCAAGATCATAAGGA
AGCAAGGGATAATGCAGCAGTAGAAGAAAAGTCTTCTTGCTCTTCCCCTTCTGTGCCTGGGGAGACTCTT
GAGAAGCCACCAGCTTCCAAAACAAGTAGTGACGCTGGATGGCTTTCCTGTGTATCATCGCCTGCCACTG
TTTGTGGAGATGAATTAGAATTTGATGATGGTACTTACTTTCACTGTGGGGGGAACTCATTATACTCAGA
GTATCGAACCTGCCAAGAAAATCCATGCAAACATTGCCTAGATATGTATGTGAATCTTGTGGAGCAGTAT
GTACTCTACAAATTTAAAATGAAAAAACTCATTGACAGAAATGAATTAATAGATCTTATTGAACCAAAGT
ACCGGTATAATTTTAGTGATATATTTAAAAGAGCTTTTGAGAACATTGAAATTGTGTTTGCAGCTAGTGT
GATTGAAATTGACTCAACTAATCACGTTTATGATCTAGTCAGCAAGCTAAAACTCCCCAACAAAGGAAGG
GTTTGCCCTGGCAGGGGTTTACCAAAAACTGGTCTTCTTATGACTATCCTGGCTATGATTTTTATGAACG
GTAACTCTGCTTCTGAGGAAGACATTTGGAAATTCCTGAATTATATGCAAGTGTACCCAGGGAGGAAGCA
TTTTATTTATAGAGAGCCACGGAAGCTCATCACTCAAGATTTCGTAAAACTGAAGTACCTGGAATACAAG
CAGATATCCCTTAGTGATCCTCCATGCTATCGGTTCCAATGGGGTCCAAAAGCTTATACTGAAACTACCA
AGATGAAAGTCCTAGAATTTATGGCTAAAGGCAGTGGCGTTGAACCTAGTACTTTTTCTGTACAATATAC
AGAAGCTTTGAGAGAAGAAAATCAAAAGACCAAGATAAGAAAATGGTATCCCATCCTGGCACAAAAACAT
TGTCCAGGACATAGCCATCAACATGTCCAGAAGGTTATGAAACCTCAATAA

Translation (366 aa):
MPRGQKNKHHRNRLKNKKHNQEKVHPQKDESQEKGHHKRDDFQDHKEARDNAAVEEKSSCSSPSVPGETL
EKPPASKTSSDAGWLSCVSSPATVCGDELEFDDGTYFHCGGNSLYSEYRTCQENPCKHCLDMYVNLVEQY
VLYKFKMKKLIDRNELIDLIEPKYRYNFSDIFKRAFENIEIVFAASVIEIDSTNHVYDLVSKLKLPNKGR
VCPGRGLPKTGLLMTILAMIFMNGNSASEEDIWKFLNYMQVYPGRKHFIYREPRKLITQDFVKLKYLEYK
QISLSDPPCYRFQWGPKAYTETTKMKVLEFMAKGSGVEPSTFSVQYTEALREENQKTKIRKWYPILAQKH
CPGHSHQHVQKVMKPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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