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Report for CCDS53137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53137.1 Public Mus musculus X Arhgef9 23 108 98 CCDS HistoryNCBI Gene:236915Re-query CCDS DB by CCDS ID:53137.1Re-query CCDS DB by GeneID:236915See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53137.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113878.7 ENSMUSP00000109510.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113878.7Link to Ensembl Protein Viewer:ENSMUSP00000109510.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113878Re-query CCDS DB by Protein ID:ENSMUSP00000109510
Original member NCBI NM_001033329.3 NP_001028501.1 Updated not alive Link to Nucleotide Sequence:NM_001033329.3Link to Protein Sequence:NP_001028501.1Re-query CCDS DB by Nucleotide ID:NM_001033329Re-query CCDS DB by Protein ID:NP_001028501
Current member NCBI NM_001033329.4 NP_001028501.1 Accepted alive Link to Nucleotide Sequence:NM_001033329.4Link to Protein Sequence:NP_001028501.1Re-query CCDS DB by Nucleotide ID:NM_001033329Re-query CCDS DB by Protein ID:NP_001028501Link to BLAST:NP_001028501.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028501.1 516 Q3UTH8-1 516 100% 0 0

Chromosomal Locations for CCDS 53137.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 95051973 95052154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95054943 95055011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95058817 95059060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95071173 95071304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95077439 95077568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95081478 95081710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95100957 95101136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95112355 95112546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95130836 95131015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95165593 95165601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1551 nt):
ATGTATGACCTGATCACTGGAGATTCCATCGTTAGTGCTGAGGCAGTATGGGATCACGTCACCATGGCCA
ACCGGGAGTTGGCATTTAAGGCTGGCGACGTCATCAAAGTCTTGGATGCTTCCAACAAGGATTGGTGGTG
GGGCCAGATCGACGATGAGGAGGGATGGTTTCCTGCCAGCTTTGTGAGGCTCTGGGTGAACCAGGAGGAT
GGGGTGGAGGAAGGGCCCAGTGATGTGCAGAATGGGCACCTGGACCCCAACTCAGACTGCCTTTGTCTGG
GCCGGCCACTACAGAACCGGGACCAGATGCGGGCCAATGTCATCAATGAGATCATGAGCACGGAGCGCCA
TTACATCAAGCACCTCAAGGACATTTGCGAGGGCTACCTGAAGCAGTGCCGAAAGAGAAGGGACATGTTC
AGTGACGAGCAGCTGAAGGTCATCTTTGGAAACATTGAAGACATATACAGATTTCAGATGGGCTTCGTGA
GAGACCTGGAGAAGCAGTACAACAATGATGATCCCCACCTCAGTGAGATAGGACCCTGCTTCTTAGAGCA
TCAAGATGGATTCTGGATATACTCTGAATATTGTAACAACCACCTGGATGCCTGCATGGAACTCTCCAAG
CTGATGAAGGACAGCCGCTATCAACACTTCTTTGAGGCCTGCCGCCTCTTGCAGCAGATGATCGACATTG
CTATTGATGGTTTTCTTTTGACTCCAGTACAGAAGATCTGCAAATATCCCTTACAATTGGCCGAGCTCCT
AAAGTATACTGCCCAAGATCACAGTGATTACAGATACGTTGCAGCTGCTTTGGCTGTCATGAGAAATGTG
ACTCAGCAGATCAATGAACGCAAGCGACGTCTGGAGAATATTGACAAGATTGCGCAATGGCAGGCCTCTG
TCCTAGACTGGGAGGGAGAGGACATCTTAGACAGGAGCTCGGAGCTGATCTACACTGGAGAGATGGCCTG
GATCTACCAGCCCTATGGCCGCAACCAGCAGAGAGTCTTCTTCCTGTTTGACCACCAGATGGTCCTCTGC
AAGAAGGACCTAATCCGGAGAGACATCCTATACTACAAGGGGCGCATTGACATGGATAAATATGAGGTAA
TTGACATCGAAGATGGCAGAGATGATGACTTTAATGTCAGCATGAAAAATGCTTTCAAGCTTCATAACAA
GGAAACGGAAGAAGTGCATCTGTTCTTTGCCAAGAAACTGGAGGAGAAAATACGTTGGCTTAGAGCTTTC
AGAGAAGAGAGAAAAATGGTACAAGAAGATGAAAAAATTGGCTTTGAGATTTCTGAAAATCAGAAGAGAC
AGGCTGCAATGACTGTGAGAAAAGCTTCTAAACAGAAAGGTGTCAACTCTGCCCGCTCAGTTCCTCCTTC
CTACCCACCACCACAGGACCCGTTAAACCAGGGCCAGTACCTGGTCCCCGATGGCATCGCTCAGTCTCAA
GTGTTTGAGTTCACTGAACCGAAACGCAGCCAGTCACCATTCTGGCAAAACTTCAGTAGGTTAACCCCCT
TCAAAAAATAA

Translation (516 aa):
MYDLITGDSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQED
GVEEGPSDVQNGHLDPNSDCLCLGRPLQNRDQMRANVINEIMSTERHYIKHLKDICEGYLKQCRKRRDMF
SDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDPHLSEIGPCFLEHQDGFWIYSEYCNNHLDACMELSK
LMKDSRYQHFFEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNV
TQQINERKRRLENIDKIAQWQASVLDWEGEDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLC
KKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAF
REERKMVQEDEKIGFEISENQKRQAAMTVRKASKQKGVNSARSVPPSYPPPQDPLNQGQYLVPDGIAQSQ
VFEFTEPKRSQSPFWQNFSRLTPFKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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