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Report for CCDS53143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53143.1 Public Mus musculus X Eda 23 108 98 CCDS HistoryNCBI Gene:13607Re-query CCDS DB by CCDS ID:53143.1Re-query CCDS DB by GeneID:13607See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53143.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113778.7 ENSMUSP00000109408.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113778.7Link to Ensembl Protein Viewer:ENSMUSP00000109408.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113778Re-query CCDS DB by Protein ID:ENSMUSP00000109408
Original member Current member NCBI NM_001177939.1 NP_001171410.1 Accepted alive Link to Nucleotide Sequence:NM_001177939.1Link to Protein Sequence:NP_001171410.1Re-query CCDS DB by Nucleotide ID:NM_001177939Re-query CCDS DB by Protein ID:NP_001171410Link to BLAST:NP_001171410.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171410.1 386 O54693-3 386 100% 0 0

Chromosomal Locations for CCDS 53143.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 99975781 99976176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100309994 100310099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100381455 100381478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100389702 100389881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100391341 100391375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100392333 100392384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100395028 100395143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100396905 100397156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGGGCTACCCAGAGGTAGAGCGCAGGGAACCCCTGCCTGCGGCAGCGCCAAGGGAGCGGGGCAGCCAGG
GCTGCGGCTGTCGCGGGGCCCCTGCTCGGGCGGGCGAAGGGAACAGCTGCCGGCTCTTCCTGGGTTTCTT
TGGCCTCTCGCTGGCCCTCCACCTGCTGACGCTGTGCTGCTACCTAGAGTTGCGGTCCGAATTGCGGCGG
GAACGGGGAACCGAGTCCCGCCTCGGTGGCCCGGGTGCTCCTGGCACCTCTGGCACCCTAAGCAGCCCTG
GGAGCCTCGACCCGGTGGGTCCCATCACCCGCCACCTGGGGCAGCCGTCCTTTCAACAGCAGCCTTTGGA
ACCGGGAGAAGATCCACTCCCCCCTGACTCCCAGGACCGGCACCAGATGGCCCTCCTGAATTTCTTCTTT
CCTGATGAAAAGGCATATTCTGAAGAGGAAAGTAGGCGTGTTCGCCGCAATAAGAGAAGCAAAAGTGGTG
AAGGAGCAGATGGTCCTGTTAAAAACAAGAAAAAGGGAAAGAAGGCAGGGCCACCTGGGCCCAACGGCCC
CCCAGGACCTCCAGGACCTCCGGGACCCCAGGGACCTCCAGGGATTCCAGGAATTCCTGGGATTCCAGGA
ACAACTGTTATGGGACCACCTGGCCCACCTGGCCCTCCTGGTCCTCAAGGACCCCCTGGCCTCCAAGGAC
CTTCTGGTGCTGCTGATAAAACTGGAACTCGGGAAAATCAGCCAGCTGTGGTGCATCTGCAGGGCCAAGG
GTCAGCAATTCAAGTCAAAAATGGTGGAGTGCTCAATGACTGGTCTCGCATCACTATGAACCCTAAGGTG
TTTAAACTACATCCCCGCAGCGGGGAGCTGGAGGTACTGGTGGACGGCACCTACTTCATCTATAGTCAGG
TCTACTACATCAACTTCACTGACTTTGCCAGCTACGAGGTGGTGGTGGATGAGAAGCCCTTCCTGCAGTG
CACCCGCAGCATTGAGACAGGGAAGACCAACTACAACACTTGCTATACTGCAGGCGTGTGCCTCCTCAAG
GCCAGGCAGAAAATCGCCGTGAAGATGGTGCACGCTGACATCTCTATCAATATGAGCAAGCACACCACCT
TCTTCGGGGCCATCAGGCTGGGCGAAGCCCCTGCATCCTAG

Translation (386 aa):
MGYPEVERREPLPAAAPRERGSQGCGCRGAPARAGEGNSCRLFLGFFGLSLALHLLTLCCYLELRSELRR
ERGTESRLGGPGAPGTSGTLSSPGSLDPVGPITRHLGQPSFQQQPLEPGEDPLPPDSQDRHQMALLNFFF
PDEKAYSEEESRRVRRNKRSKSGEGADGPVKNKKKGKKAGPPGPNGPPGPPGPPGPQGPPGIPGIPGIPG
TTVMGPPGPPGPPGPQGPPGLQGPSGAADKTGTRENQPAVVHLQGQGSAIQVKNGGVLNDWSRITMNPKV
FKLHPRSGELEVLVDGTYFIYSQVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLK
ARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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