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Report for CCDS53179.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53179.1 Public Mus musculus X Vmn2r121 23 108 98 CCDS HistoryNCBI Gene:100038941Re-query CCDS DB by CCDS ID:53179.1Re-query CCDS DB by GeneID:100038941See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 53179.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094491.4 ENSMUSP00000092067.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094491.4Link to Ensembl Protein Viewer:ENSMUSP00000092067.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000094491Re-query CCDS DB by Protein ID:ENSMUSP00000092067
Original member Current member NCBI NM_001100616.1 NP_001094086.1 Accepted alive Link to Nucleotide Sequence:NM_001100616.1Link to Protein Sequence:NP_001094086.1Re-query CCDS DB by Nucleotide ID:NM_001100616Re-query CCDS DB by Protein ID:NP_001094086Link to BLAST:NP_001094086.1

Chromosomal Locations for CCDS 53179.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 124127778 124128685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124129834 124129957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124131121 124131342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124132169 124132972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124133447 124133729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124135629 124135831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2544 nt):
ATGAAGAAGCTCTGTGCTTTCACTATTTCATTTTTGTTTCTGAAGTTTTCTCTCATCTTGTGCTGTCTGA
GTGAACCAAGTTGCTTTTGGAGGATAAGGAATAGTGAAGATAGTGATGGAGATTTGCAAAGGGAATGTCA
TTTTTACCTTTGGTTAATTGATGAATCTATTGAAGATAATTTTGTTTCAGATTTAAATTTTCGAATTGCA
GCAAGTGAATATGAGCTTCTTCTGGTAATCTTTTTTGCTACTGATGAAATCAACAAGAATTCTTATCTTT
TACCCAACATGACTTTGATGTTCTCCATCATTGGTGGAAACTGTCATGATTTATTGAGAAGTCTGGATCA
AGAATATACAGAAATAAAAGGACATATGAATTTTGTTAATTATTTCTGTTATTTAGATGATTCATGTGCC
ATAGGTTTTACAGGTCCATCATGGAAAACATCCTTAAAACTGGGATTGCATTCTTCGATGCCACTGGTTT
TCTTTGGACCATTTAATCCTAACCTACGCGACCATGACCGGCTGCCCCATGTCCATCAAGTAGCCACCAA
GGACACACATTTGTCCCATGGCATGGTCTCCTTGATGTTTCATTTTAGATGGACTTGGATAGGACTGGTC
ATCTCAGATGATGACCAGGGTATTCAGTTTCTCTCAGATTTAAGAGAAGAGAGCCAAAGGCATGAGATCT
GTTTAGCTTTTGTTAATATGATCCCAGAAAACATGCAGATATACATGACAAGAGCTACAATATATGATAA
ACAAATTATGACATCTTCAGCAAATGTTGTTATCATTTATGGTGAAATGAACTCTACTCTAGAAGTAAGC
TTTAGAAGATGGGAAGAGTTAGGTGCTTGGAGAATCTGGATCACAACCTCACAGTGGGATGTCATCAAAA
ATAAAAAAGAATTCACCTTTAATCTCTTCCATGGCACTATCACTTTTGCACACCACAAAGTTGAGATTCC
TAAATTTAAAAAATTTATGCAAACAATGAACACTGCCAAATACCCAGTAGATATTTCTCATACTATATTG
GAGTGGAATTATTTTAATTGTTCAATCTCTAAGAACAGCAGTAAAATGGATCATATGACATTCAACAACA
CATTGGAATGGACAGCACTGCACAACTATGATATGGCCATGAGTGATGAAGGTTACAATTTGTATAATGC
TGTTTATGCTGCGGCCCACACCTACCATGAACACATTCTTCAACAAGTAGAGTCTCAGAAAAAGGCAAAA
CCCAAAAGATATTTCACTGCTTGTCAGCAGGTGTCTTCCTTGATGAAAACCAGGGTATTTTCGAATCCTG
TTGGAGAACTGGTGAACATGAAGCATAGAGAAAATCAGTGTACAGAGTATGATATTTTCATCATTTGGAA
TTTTCCACAAGGCCTTGGATTAAAAGTGAAAATAGGAAGCTATATACCTTGTTTTCCAAAGAGTCAACAA
CTTCATATATGTGATGACTTGGAATGGGCCATGGGAGGAACAGTTCCATCCTCTGTATGTAGTGTGGCCT
GTACTGCTGGATTCAGGAAAATTCATCAGGAAGAAACAGCAGACTGCTGCTTTGATTGTGTTCAATGCCC
AGAAAATGAGGTTTCCAATGAAACAGCAGATATGGAACAGTGTGTGAGGTGTCCAGATGATAAGTATGCC
AACATAGAGCAAACCCACTGCCTCTCAAGAGCTGTATCATTTCTGGCTTATGAAGATCCATTGGGGATGG
CTCTAGGCTGCATGGCACTGTCCTTCTCGGCCATCACAATTCTAGTCCTGGTCACATTTGTGAAGTACAA
GGATACTCCCATTGTGAAGGCCAATAACCGCATTCTCAGCTACATCCTGCTCATCTCTCTCGTCTTCTGC
TTTCTCTGCTCCCTGCTCTTCATTGGACATCCCAACCAGGTCTCCTGCATCTTGCAGCAAACCATATTTG
GAGTATTTTTCACTGTGTCTGTTTCTACAGTGTTGGCCAAAACAATAACTGTGGTCATGGCTTTCAAGCT
CACTACTCCAGGAAGAAGAATAAGAGGGATGATGATGACAGGGGCACCTAAGTTGGTCATTCCCATTTGT
ACCCTAATCCAACTTGTTCTCTGTGGAATCTGGTTGGTCACATCTCCTCCCTTTATTGACAGAGATATAC
AATCAGAGCATGGGAAGACTGTCATTCTTTGCAATAAAGGCTCTGTCATTGCCTTCCACGTTGTCCTGGG
ATACTTGGGTTCCTTGGCTCTGGGGAGCTTCACTTTGGCTTTCTTGGCTAGGAACCTTCCTGACACATTC
AATGAAGCCAAGTTCCTAACTTTCAGCATGCTGGTGTTCTGCAGTGTCTGGATCACCTTCCTCCCTGTGT
ACCACAGCACCAGGGGGAGGGTCATGGTGGTTGTAGAGGTTTTCTCCATCTTGGCTTCTAGTGCGGGGTT
GCTAATGTGTATCTTTGTCCCAAAGTGTTATGTTATTTTAATTAGACCAGATTCAAATTTTATAAAGAAA
CACAAAGGTAAATTGCTTAATTGA

Translation (847 aa):
MKKLCAFTISFLFLKFSLILCCLSEPSCFWRIRNSEDSDGDLQRECHFYLWLIDESIEDNFVSDLNFRIA
ASEYELLLVIFFATDEINKNSYLLPNMTLMFSIIGGNCHDLLRSLDQEYTEIKGHMNFVNYFCYLDDSCA
IGFTGPSWKTSLKLGLHSSMPLVFFGPFNPNLRDHDRLPHVHQVATKDTHLSHGMVSLMFHFRWTWIGLV
ISDDDQGIQFLSDLREESQRHEICLAFVNMIPENMQIYMTRATIYDKQIMTSSANVVIIYGEMNSTLEVS
FRRWEELGAWRIWITTSQWDVIKNKKEFTFNLFHGTITFAHHKVEIPKFKKFMQTMNTAKYPVDISHTIL
EWNYFNCSISKNSSKMDHMTFNNTLEWTALHNYDMAMSDEGYNLYNAVYAAAHTYHEHILQQVESQKKAK
PKRYFTACQQVSSLMKTRVFSNPVGELVNMKHRENQCTEYDIFIIWNFPQGLGLKVKIGSYIPCFPKSQQ
LHICDDLEWAMGGTVPSSVCSVACTAGFRKIHQEETADCCFDCVQCPENEVSNETADMEQCVRCPDDKYA
NIEQTHCLSRAVSFLAYEDPLGMALGCMALSFSAITILVLVTFVKYKDTPIVKANNRILSYILLISLVFC
FLCSLLFIGHPNQVSCILQQTIFGVFFTVSVSTVLAKTITVVMAFKLTTPGRRIRGMMMTGAPKLVIPIC
TLIQLVLCGIWLVTSPPFIDRDIQSEHGKTVILCNKGSVIAFHVVLGYLGSLALGSFTLAFLARNLPDTF
NEAKFLTFSMLVFCSVWITFLPVYHSTRGRVMVVVEVFSILASSAGLLMCIFVPKCYVILIRPDSNFIKK
HKGKLLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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