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Report for CCDS53183.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53183.1 Public Mus musculus X Trmt2b 23 108 98 CCDS HistoryNCBI Gene:215201Re-query CCDS DB by CCDS ID:53183.1Re-query CCDS DB by GeneID:215201See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53183.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087540.3 ENSMUSP00000084819.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087540.3Link to Ensembl Protein Viewer:ENSMUSP00000084819.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000087540Re-query CCDS DB by Protein ID:ENSMUSP00000084819
Original member Current member NCBI NM_001167995.1 NP_001161467.1 Accepted alive Link to Nucleotide Sequence:NM_001167995.1Link to Protein Sequence:NP_001161467.1Re-query CCDS DB by Nucleotide ID:NM_001167995Re-query CCDS DB by Protein ID:NP_001161467Link to BLAST:NP_001161467.1

Chromosomal Locations for CCDS 53183.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134262774 134262884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134266261 134266315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134267331 134267545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGCACAACCCAAGACTATTCCTTTCCAGAGCGGGTTTCTTCTCCAAACCAGGACTGCTTCCCTGGGATA
CTGGAAGACCACCAGATTTGTCACAGTCCTTATTGGGCAGAGCATATAAAGGGAGTTTCACCAGCGTGAT
AGCTAAGAAGCACCCAAGCAGACAAAAATATCAGAAGAAACAAAGGCATTGTAGAGATGACTCCTGGCAG
GAGAGGCTGGCTGATGTTGTGACTCCACTCTGGAGGCTGAGTTATGAAGCACAACTCAAGCCTACCACCA
CTGGCTACCGGAACAAGTCCACCTTTTCTGTGTACAGGAGCCCAGATGGCAATCCAAAGACTGTGGGCTA
CTACCTAGGAACTTGGAAAGGTCAGTTCTAA

Translation (126 aa):
MHNPRLFLSRAGFFSKPGLLPWDTGRPPDLSQSLLGRAYKGSFTSVIAKKHPSRQKYQKKQRHCRDDSWQ
ERLADVVTPLWRLSYEAQLKPTTTGYRNKSTFSVYRSPDGNPKTVGYYLGTWKGQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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