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Report for CCDS53216.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53216.2 Public Mus musculus X Gm15097 23 108 98 CCDS HistoryNCBI Gene:434869Re-query CCDS DB by CCDS ID:53216.2Re-query CCDS DB by GeneID:434869See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 53216.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101180.7 ENSMUSP00000098740.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101180.7Link to Ensembl Protein Viewer:ENSMUSP00000098740.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000101180Re-query CCDS DB by Protein ID:ENSMUSP00000098740
Original member Current member NCBI NM_001198987.2 NP_001185916.2 Accepted alive Link to Nucleotide Sequence:NM_001198987.2Link to Protein Sequence:NP_001185916.2Re-query CCDS DB by Nucleotide ID:NM_001198987Re-query CCDS DB by Protein ID:NP_001185916Link to BLAST:NP_001185916.2

Chromosomal Locations for CCDS 53216.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 149784549 149784564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 149799587 149799712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 149800433 149800512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 149804164 149805122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 149818127 149818208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 149819015 149819064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 149826055 149826091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGGCGAACCATGAAGACGAAATTAGACAGCTGAGATATCTAGAAGCTGCTAATTCTGAAGAAGAATACA
ATGAGGAGAATGACATACAGTCAGAAAGCTCCAGAGGGCAAGCATTTTTCCCTGGACATCCGCGAGGGAG
AGGACACAGACGTGACAGTAGGGGAAGAAATGGCCATTTTTTCAGACAAAGATTTTCAGCAAATCATCCT
CTACTTCATCTGACAAGACAAGTCAACCTAGAAAGTCTAACAAGGAGGAATGGAAACCAATCAGAAGAGA
GACAGCTACAACAAGAAAGAATCCAATTGTTCTTCAGGAGTTTACATGGCCTCTCCCAATCTCATGACCA
CCACATTGGCAGATCTCATGGCCACTATTCCAGAAGATCACGTAATCGATTTAGGAGAGCTCCTGTTCAC
TCAGAGAGATCTCATGTCTACTCAGGTAGAACTAATAACTATACAGATAGACCACACCATGACCTCTCAG
ATAGACCACACAATCAACTCTCAGTGAGACCACATCCTGACCTCTCAGGTAGACCACTTCATGACTACTC
AGGTAGACCACATCAAAACCATGCAGTTAGGCTTCAACATGGCCACTCAGATAGATATCATCTTACCCAT
ACAGAGAGAGTTCTTCCTAACAACTCAGGGATAGCTCATCCTGGCCACACAGAGAGAGATAATCAAGTCC
AAAGAGGGAGAGCTCATGATAACCAATCAGGGTTAGCTCATCACAACCATGATGGCAGATCTCATCATGA
CCACTCAGGGAGAGCTTATCACGGCCATGCAAGGAGAGCTCATAACAACCAGTCATGGAGATCTGATAAC
AACCAGTCATGGAGAGATCTTAACCAGTCATGGAGAGGTCAGAACAACCAGTCACAGAGAGGTCATGACA
ACCAGTCACAGAGAGGTCATGACAACCAGTCACGTAGAGGTCATGACAACCAGTCACAGAGAGGTCATGA
CAACCAGTCACAGAGAGGTCATAATGATCAGTCATGGAGAGCTCATAACATCCGGTCACGGAGAGATCGT
TATCACACCTCATTGAGATCTAGTAGCATCCAGTCATGGATGCTTCATGAAAGAGAAAGATACCATGGTC
CAAGAGGAAGAAATGGACCAAGGGATGCATCACCACCAGGATCTGAGCCAGAAATTGACAGATCGTCTGC
AATAAGAGAAAGGACTGACTATTTATGGGTACAGGAACATCGAAGAAATGAGACAGTTGAACTGAATGTA
GGGCTAGAAGACGGCTACAGCAGTGCTGAAGAGAGTGATGAAAGTTTTGACAGACTAACCTGTCGCTCCA
TGCTAGATACACTATACTAA

Translation (449 aa):
MANHEDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHP
LLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHYSRRSRNRFRRAPVH
SERSHVYSGRTNNYTDRPHHDLSDRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTH
TERVLPNNSGIAHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDN
NQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDR
YHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNV
GLEDGYSSAEESDESFDRLTCRSMLDTLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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