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Report for CCDS53224.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53224.1 Public Mus musculus X Iqsec2 23 108 98 CCDS HistoryNCBI Gene:245666Re-query CCDS DB by CCDS ID:53224.1Re-query CCDS DB by GeneID:245666See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53224.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168786.7 ENSMUSP00000127249.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168786.7Link to Ensembl Protein Viewer:ENSMUSP00000127249.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168786Re-query CCDS DB by Protein ID:ENSMUSP00000127249
Original member NCBI NM_001114664.2 NP_001108136.1 Updated not alive Link to Nucleotide Sequence:NM_001114664.2Link to Protein Sequence:NP_001108136.1Re-query CCDS DB by Nucleotide ID:NM_001114664Re-query CCDS DB by Protein ID:NP_001108136
Current member NCBI NM_001114664.3 NP_001108136.1 Accepted alive Link to Nucleotide Sequence:NM_001114664.3Link to Protein Sequence:NP_001108136.1Re-query CCDS DB by Nucleotide ID:NM_001114664Re-query CCDS DB by Protein ID:NP_001108136Link to BLAST:NP_001108136.1

Chromosomal Locations for CCDS 53224.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 152144473 152145179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152166934 152166963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152202908 152203169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152203932 152204333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152208770 152209665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152211210 152211371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152212022 152212144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152213287 152213453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152215501 152215640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152216341 152216439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152218877 152218976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152219732 152219893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152221647 152221820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152222283 152222332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152222922 152223887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4440 nt):
ATGGAGGCGGGGTCCGGTCCTCCGGGTGGCCCGGGATCTGAGAGCCCCAACCGGGCGGTGGAGTACCTGC
TGGAGCTGAACAACATCATCGAGAGTCAGCAGCAGCTGTTGGAGACCCAGCGGCGGCGCATAGAAGAGCT
GGAGGGCCAGTTGGACCAGCTCACCCAGGAGAACCGCGACCTGCGGGAGGAGAGCCAGCTGCACCGTGGG
GAACTGCACCGGGACCCCCTTGGCGCACGGGATAGTCCTGGCCGCGAAAGCCAGTACCAGAACCTGCGTG
AGACCCAGTTCCACCACCGCGAGCTGCGGGAGAGCCAGTTCCACCAGGCGTCCCGGGACGTGGGCTACCC
GAACCGGGATGGCGCTTACCAGAACCGGGAAGCTATCTATCGGGATAAGGAGCGAGAAGCCTCCTATCAA
CTTCAGGACACTACCGGTTACACAGCCCGCGAGCGCGACGTGGCCCAATGCCACCTGCACCATGAGAACC
CAGCCCTGGGTCGCGAGCGTGGCGGGAGGGAGGCTGGGCCAGCGCACCCGGGCCGCGAGAAGGAAGCCGG
CTATTCCGCGGCGGTGGGCGTGGGGCAGCGGCCACCGCGGGAGCGGGGCCAGTTGAGTCGTGGCGCATCC
AGAAGCTCCAGTCCTGGCGCTGGCGGAGGTCACAGCACCAGTACCAGCACCAGCCCGGCTACAACCCTCC
AGAGAAAATCTGATGGTGAGAATTCCAGAACAGTCAGTGTGGAGGGTGATGCCCCAGGCAGTGACCTGAG
CACAGCGGTTGATAGTCCTGGGAGCCAACCCCCCTACCGGCTGAGCCAACTACCCCCCACCAGCAGCCAC
ATGGGGGGCCCCCCTGCCGGGGTGGGCCTTCCTTGGGCTCAGAGGGCACGCCTGCAGCCAGCCAGTGTCG
CCCTGAGGAAGCAGGAGGAGGAGGAGATCAAGCGCTCCAAGGCCCTGTCAGACAGCTATGAACTCTCCAC
AGACCTGCAGGACAAGAAGGTGGAAATGCTGGAGAGGAAGTATGGGGGCTCCTTCCTGAGCCGCAGGGCT
GCCAGGACCATCCAGACAGCCTTTCGACAGTACCGTATGAATAAGAACTTTGAGCGGCTGCGCAGCTCAG
CTTCAGAGAGCCGCATGTCCCGCCGCATCATCTTGTCCAACATGCGGATGCAGTTCTCCTTTGAGGAGTA
CGAGAAAGCACAGAACCCTGCATACTTCGAGGGCAAGCCTGCCTCATTGGATGAGGGTGCCATGGCTGGC
GCCCGGAGCCACCGGCTTGAACGGGGCCTCCCTTATGGAGGCTCCTGTGGTGGGGGCATCGATGGTGGTG
GAAGTTCAGTCACCACATCTGGAGAGTTTTCTAATGACATCACAGAGCTCGAGGACTCCTTCTCCAAACA
GGTAAAGTCTCTGGCTGAATCCATTGATGAGGCCCTGAACTGCCACCCATCAGGGCCTATGTCTGAGGAG
CCAGGGTCAGCCCAACTGGAGAAGCGGGAATCAAAGGAACAGCAAGAAGACAGCTCAGCCACATCCTTCA
GTGACCTCCCCCTGTACTTGGATGACCCAGTTCCTCCTCCATCACCTGAGCGACTGCCCAGCACAGAGCC
CCCACCCCAAGGCCGCCCTGAGTTCTGGGCACCAGCTCCCCTCCCACCAGTTCCTCCACCAATGCCACCA
GGGACCCGGGAAGATGGTAGCCGTGAGGAAGGCACTCGAAGGGGTCCTGGGTGCTTGGAGTGCCGGGATT
TCCGGCTCCGGGCTGCACACCTCCCCCTCCTCACCATTGAGCCTCCCAGTGACAGTTCTGTAGACCTGAG
TGACCGCTCAGATCGCGGCTCTGTCCACCGCCAGCTGGTGTATGAGGCTGATGGCTGCAGCCCCCATGGG
ACCCTGAAGCACAAGGGGCCACCAGGCAGGGCCCCAATCCCACACCGCCACTACCCTGCCCCTGAGGGTC
CAGCTCCAGCCCCACCAGGGCCCCTGCCACCAGCCCCCAATAGTGGTACTGGGCCCAGTGGTGTGGCTGG
AGGTCGGAGGTTGGGGAAGTGTGAGGCAGCAGGTGAGAACTCTGATGGTGGAGACAATGAGAGTCTGGAG
AGCTCCAGCAACTCTAATGAGACCATCAACTGCAGCTCTGGCTCCTCCTCTCGGGATAGCCTGAGGGAAC
CGCCAGCCACTGGCCTGTGCAAGCAGACTTACCAGCGGGAGACAAGGCACAGCTGGGACTCGCCAGCCTT
CAACAATGATGTGGTACAAAGGCGACATTACAGAATTGGCCTCAACCTCTTCAATAAGAAGCCAGAGAAG
GGTATCCAGTATTTGATCGAACGAGGCTTCCTGTCTGACACTCCTGTTGGGGTGGCTCACTTCATCCTGG
AGAGGAAAGGCCTGAGCCGGCAGATGATAGGGGAATTCCTGGGGAATCGGCAGAAGCAGTTCAACAGAGA
TGTGTTGGACTGTGTGGTGGATGAGATGGACTTCTCCTCTATGGATTTGGACGATGCACTCAGGAAGTTC
CAATCCCATATCCGAGTTCAGGGGGAGGCCCAGAAAGTGGAGCGACTCATTGAAGCTTTCAGCCAGCGGT
ACTGTGTCTGTAACCCTGCCCTCGTACGCCAGTTCCGGAACCCAGACACCATCTTCATCCTTGCTTTTGC
CATCATCCTCCTCAATACCGATATGTACAGCCCCAGTGTCAAGGCTGAACGCAAGATGAAGCTGGATGAC
TTCATTAAGAACCTGAGAGGAGTTGACAATGGTGAAGACATCCCCCGCGACCTTCTAGTAGGCATCTACC
AGCGCATCCAAGGTCGTGAACTGAGGACCAATGATGACCATGTGTCCCAGGTGCAGGCTGTGGAGCGCAT
GATTGTTGGCAAGAAACCGGTCCTGTCGCTCCCTCACCGTCGACTGGTTTGCTGCTGCCAGCTCTATGAG
GTGCCAGATCCAAACCGTCCCCAAAGGCTGGGGCTGCATCAGCGGGAGGTCACCAAAATTTTCCAGAAGA
AGAAGATCTTGGTGACATACAGCTTCCGTCAGTCCTTTCCCCTGGTGGAAATGCATATGCAGCTCTTCCA
GAATTCATATTATCAGTTTGGGATCAAGTTACTGTCTGCAGTACCTGGAGGGGAACGAAAAGTCCTCATC
ATCTTTAATGCTCCTAGCCTCCAAGACAGGCTACGCTTTACCTCTGACCTGCGGGAGTCCATTGCTGAGG
TGCAGGAGATGGAGAAGTATCGTGTGGAATCGGAGCTGGAAAAGCAGAAAGGTATGATGCGGCCTAATGC
CTCACAGCCTGGAGGAGCCAAGGACTCAGTGAATGGGACTCTGGCCCGCAGTAGTCTGGAGGACACTTAT
GGGGCAGGCGATGGGCTCAAGCGGGGTGCACTCAGTAGTTCCCTGCGAGACCTCTCTGATGCAGGGAAGC
GGGGGCGGCGTAACAGCGTGGGATCGCTGGACAGCACCATCGAAGGGTCTGTTATTAGCAGTCCACGCCC
TCACCAGAGGATGCCACCTCCGCCCCCACCCCCGCCGCCAGAGGAGTACAAGAGCCAGAGGCCAGTCTCC
AACTCCTCATCTTTCCTGGGCTCCCTATTTGGAAGCAAGAGGGGCAAAGGGCCCTTCCAGATGCCACCAC
CACCAACAGGCCAGGCCTCTGCCTCGTCTTCATCTGCTTCCTCCACCCACCACCACCATCACCACCACCA
CCATGGTCACAGCCATGGTGGCCTGGGGGTGCTACCTGATGGGCAGTCCAAGCTCCAGGCCCTGCATGCC
CAGTATTGCCAAGGACCGGGCCCTGCCCCACCACCCTACCTCCCACCCCAGCAACCCCCTCTGCCTCCAC
CCCCTCAGCAGCCTCCACCCCTGCCCCAGCTGGGCTCCATTCCACCACCACCTGCCTCAGCCCCACCTGT
GGGGCCACATCGACACTTCCATGCCCATGGCCCAGTTCCAGGACCCCAGCATTATACCTTGGGCCGGCCA
GGCAGAGCCCCAAGACGAGGGGCTGGAGGACACCCTCAGTTTGCTCCACACGGCCGCCACCCCTTGCACC
AGCCCACATCCCCATTACCCCTGTACAGTCCTGCTCCACAGCACCCTCCTGCCCATAAACAGGGCCCCAA
GCACTTCATCTTCAGTCACCACCCACAGATGATGCCAGCAGCAGGTGCAGCTGGGGGCCCTGGGTCCCGG
CCACCAGGGGGATCCTATTCCCACCCTCACCACCCCCAATCACCACTGTCACCACACTCACCCATCCCAC
CTCATCCCTCCTACCCTCCCCTGCCCCCACCCTCACCTCACACCCCACATTCACCCCTACCACCCACCTC
CCCCCATGGCCCACTGCACGCCTCTGGGCCCCCTGGCACGGCTAATCCACCCAGTGCAAACCCCAAGGCC
AAGCCAAGCCGGATCAGCACTGTGGTCTGA

Translation (1479 aa):
MEAGSGPPGGPGSESPNRAVEYLLELNNIIESQQQLLETQRRRIEELEGQLDQLTQENRDLREESQLHRG
ELHRDPLGARDSPGRESQYQNLRETQFHHRELRESQFHQASRDVGYPNRDGAYQNREAIYRDKEREASYQ
LQDTTGYTARERDVAQCHLHHENPALGRERGGREAGPAHPGREKEAGYSAAVGVGQRPPRERGQLSRGAS
RSSSPGAGGGHSTSTSTSPATTLQRKSDGENSRTVSVEGDAPGSDLSTAVDSPGSQPPYRLSQLPPTSSH
MGGPPAGVGLPWAQRARLQPASVALRKQEEEEIKRSKALSDSYELSTDLQDKKVEMLERKYGGSFLSRRA
ARTIQTAFRQYRMNKNFERLRSSASESRMSRRIILSNMRMQFSFEEYEKAQNPAYFEGKPASLDEGAMAG
ARSHRLERGLPYGGSCGGGIDGGGSSVTTSGEFSNDITELEDSFSKQVKSLAESIDEALNCHPSGPMSEE
PGSAQLEKRESKEQQEDSSATSFSDLPLYLDDPVPPPSPERLPSTEPPPQGRPEFWAPAPLPPVPPPMPP
GTREDGSREEGTRRGPGCLECRDFRLRAAHLPLLTIEPPSDSSVDLSDRSDRGSVHRQLVYEADGCSPHG
TLKHKGPPGRAPIPHRHYPAPEGPAPAPPGPLPPAPNSGTGPSGVAGGRRLGKCEAAGENSDGGDNESLE
SSSNSNETINCSSGSSSRDSLREPPATGLCKQTYQRETRHSWDSPAFNNDVVQRRHYRIGLNLFNKKPEK
GIQYLIERGFLSDTPVGVAHFILERKGLSRQMIGEFLGNRQKQFNRDVLDCVVDEMDFSSMDLDDALRKF
QSHIRVQGEAQKVERLIEAFSQRYCVCNPALVRQFRNPDTIFILAFAIILLNTDMYSPSVKAERKMKLDD
FIKNLRGVDNGEDIPRDLLVGIYQRIQGRELRTNDDHVSQVQAVERMIVGKKPVLSLPHRRLVCCCQLYE
VPDPNRPQRLGLHQREVTKIFQKKKILVTYSFRQSFPLVEMHMQLFQNSYYQFGIKLLSAVPGGERKVLI
IFNAPSLQDRLRFTSDLRESIAEVQEMEKYRVESELEKQKGMMRPNASQPGGAKDSVNGTLARSSLEDTY
GAGDGLKRGALSSSLRDLSDAGKRGRRNSVGSLDSTIEGSVISSPRPHQRMPPPPPPPPPEEYKSQRPVS
NSSSFLGSLFGSKRGKGPFQMPPPPTGQASASSSSASSTHHHHHHHHHGHSHGGLGVLPDGQSKLQALHA
QYCQGPGPAPPPYLPPQQPPLPPPPQQPPPLPQLGSIPPPPASAPPVGPHRHFHAHGPVPGPQHYTLGRP
GRAPRRGAGGHPQFAPHGRHPLHQPTSPLPLYSPAPQHPPAHKQGPKHFIFSHHPQMMPAAGAAGGPGSR
PPGGSYSHPHHPQSPLSPHSPIPPHPSYPPLPPPSPHTPHSPLPPTSPHGPLHASGPPGTANPPSANPKA
KPSRISTVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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