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Report for CCDS53294.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53294.1 Public Homo sapiens 1 SYNC 24 110 108 CCDS HistoryNCBI Gene:81493Re-query CCDS DB by CCDS ID:53294.1Re-query CCDS DB by GeneID:81493See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53294.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373484.4 ENSP00000362583.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373484.4Link to Ensembl Protein Viewer:ENSP00000362583.3Re-query CCDS DB by Nucleotide ID:ENST00000373484Re-query CCDS DB by Protein ID:ENSP00000362583
Original member Current member NCBI NM_001161708.2 NP_001155180.2 Accepted alive Link to Nucleotide Sequence:NM_001161708.2Link to Protein Sequence:NP_001155180.2Re-query CCDS DB by Nucleotide ID:NM_001161708Re-query CCDS DB by Protein ID:NP_001155180Link to BLAST:NP_001155180.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155180.2 476 Q9H7C4-2 476 100% 0 0

Chromosomal Locations for CCDS 53294.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 32681788 32681860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32684258 32684382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32694865 32696044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32702608 32702660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGGCCAGCCCGGAGCCCCGGCGCGGCGGGGACGGCGCCGCCCAGGCCGCGAGGAAAACAAGAGTAGAGG
CCAATTCTCCTCTTCCAAAGAACTCTGGATCCCTAAATGAGGCAGAAGCCTTGAACCCAGAAGTTACTCT
ATCTTCAGAGGGGTCCTTAAACCTCGAAGACATTCTCTACCTGGAGGACACAGGTGACCTTGATGAGACA
CTCTATGTGCAAGAGACTGAGAAGGCAGAGGAGGCCCTGTATATTGAGGAGGCCATGCAGCCAGATGAGG
CTCTGCATGTGGAGGAGCCTGGGAATCCAGAGGAGACAGTGTGTGTGGAGGAAACCACGGAGCCAGATCG
GATACAGTTTGTGGAGGGGCCCGTGGAGCCAGGAAAGCCCACAAGCCCAGAGCACGTTGTTTATGAGGGA
GAGACAGTCACAAGGGCGGAGAAATCTAACCCTGAGGAGAGCCTCAGAGCCGAGCAGAGCCCCAGCATGG
AGGAGAACCTGAGCATAGAGGACCTGGAATTGCTAGAGGGGCGTTTCCAGCAGTGTGTCCAAGCTGTGGC
CCAGCTGGAAGAGGAGAGGGATCAGCTCATCCATGAGCTTGTATTGCTCCGGGAACCAGCCCTGCAGGAG
GTACAGCAAGTCCATCAAGACATCCTGGCTGCCTACAAGCTCCATGCCCAAGCAGAGCTGGAGAGAGATG
GCCTAAGGGAGGAGATCCGGCTGGTCAAGCAGAAGCTTTTCAAAGTGACAAAGGAATGTGTGGCCTACCA
ATACCAGCTGGAGTGCCGCCAGCAGGACGTGGCTCAGTTTGCCGATTTCCGGGAAGTGCTGACTACAAGG
GCAACCCAGCTCTCAGAGGAACTGGCCCAGCTCCGGGATGCCTATCAGAAGCAGAAGGAGCAGCTGCGGC
AACAACTAGAAGCCCCTCCAAGCCAGAGGGATGGGCACTTTCTCCAGGAAAGCCGGCGACTCTCTGCCCA
GTTTGAAAATCTCATGGCAGAGAGCCGCCAGGACCTGGAGGAGGAGTATGAGCCTCAGTTCCTGCGGCTC
CTAGAGAGGAAAGAAGCTGGGACCAAAGCTCTGCAGAGAACCCAGGCTGAGATCCAGGAAATGAAGGAGG
CTCTGAGACCCCTGCAAGCAGAGGCCCGGCAGCTCCGCCTGCAAAACAGGAACCTGGAGGACCAGATCGC
ACTTGTGAGGCAAAAACGAGATGAAGAGGTGCAGCAGTACAGGGAACAGCTGGAGGAAATGGAAGAACGC
CAGAGGCAGTTAAGAAATGGGGTGCAACTCCAGCAACAGAAGAACAAAGAGATGGAACAGCTAAGGCTCA
GTCTTGCTGAAGAGCTCTCTACTTATAAGGGCTGTTTAGAAATATATGGCCAAATCTGTAACCCGGAAAC
AGCAAAAAACTTCTTAGCAAAGGATCACTAA

Translation (476 aa):
MASPEPRRGGDGAAQAARKTRVEANSPLPKNSGSLNEAEALNPEVTLSSEGSLNLEDILYLEDTGDLDET
LYVQETEKAEEALYIEEAMQPDEALHVEEPGNPEETVCVEETTEPDRIQFVEGPVEPGKPTSPEHVVYEG
ETVTRAEKSNPEESLRAEQSPSMEENLSIEDLELLEGRFQQCVQAVAQLEEERDQLIHELVLLREPALQE
VQQVHQDILAAYKLHAQAELERDGLREEIRLVKQKLFKVTKECVAYQYQLECRQQDVAQFADFREVLTTR
ATQLSEELAQLRDAYQKQKEQLRQQLEAPPSQRDGHFLQESRRLSAQFENLMAESRQDLEEEYEPQFLRL
LERKEAGTKALQRTQAEIQEMKEALRPLQAEARQLRLQNRNLEDQIALVRQKRDEEVQQYREQLEEMEER
QRQLRNGVQLQQQKNKEMEQLRLSLAEELSTYKGCLEIYGQICNPETAKNFLAKDH


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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