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Report for CCDS53428.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53428.2 Public Homo sapiens 1 GORAB 24 110 108 CCDS HistoryNCBI Gene:92344Re-query CCDS DB by CCDS ID:53428.2Re-query CCDS DB by GeneID:92344See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 53428.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367762.2 ENSP00000356736.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367762.2Link to Ensembl Protein Viewer:ENSP00000356736.2Re-query CCDS DB by Nucleotide ID:ENST00000367762Re-query CCDS DB by Protein ID:ENSP00000356736
Original member Current member NCBI NM_001146039.2 NP_001139511.2 Accepted alive Link to Nucleotide Sequence:NM_001146039.2Link to Protein Sequence:NP_001139511.2Re-query CCDS DB by Nucleotide ID:NM_001146039Re-query CCDS DB by Protein ID:NP_001139511Link to BLAST:NP_001139511.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139511.2 221 Q5T7V8-2 221 100% 0 0

Chromosomal Locations for CCDS 53428.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 170532224 170532284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170539210 170539567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170542491 170542592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170544705 170544849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGGCGCAAGGTTGGGCAGGATTCTCTGAGGAGGAACTGAGGAGACTAAAGCAGACTAAAGATCCATTTG
AACCACAGCGACGTCTCCCCGCGAAGAAAAGTCGACAACAACTTCAGCGAGAAAAAGCCCTTGTAGAGCA
AAGCCAAAAACTTGGGCTTCAAGATGGATCAACCTCATTACTTCCAGAGCAGCTGCTTTCAGCACCAAAA
CAGAGAGTTAACGTTCAAAAACCACCTTTTTCTTCCCCTACTCTTCCGAGTCATTTCACTCTCACCTCCC
CCGTTGGTGATGGACAACCACAGGGCATTGAAAGTCAGCCAAAGGAACTGGGACTTGAGAATTCCCATGA
TGGTCACAACAATGTTGAGATTCTACCTCCAAAGCCAGATTGCAAATTGGAGAAAAAGAAAGTGGAATTG
CAAGAAAAATCTCGTTGGGAAGTCCTCCAACAAGAACAACGGCTAATGGAAGAGAAAAATAAACGTAAAA
AAGCTCTTTTGGCTAAAGCTATTGCAGAAAGATCCAAAAGAACTCAGGCAGAGACCATGAAACTAAAGCG
GATCCAGAAGGAGTTGCAGGCTTTAGATGACATGGTGTCAGCTGACATTGGAATTCTCAGGAACCGGATT
GATCAGGCCAGCTTAGACTATTCATACGCTCGGTGA

Translation (221 aa):
MAQGWAGFSEEELRRLKQTKDPFEPQRRLPAKKSRQQLQREKALVEQSQKLGLQDGSTSLLPEQLLSAPK
QRVNVQKPPFSSPTLPSHFTLTSPVGDGQPQGIESQPKELGLENSHDGHNNVEILPPKPDCKLEKKKVEL
QEKSRWEVLQQEQRLMEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRI
DQASLDYSYAR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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