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Report for CCDS53477.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53477.1 Public Homo sapiens 1 TATDN3 24 110 108 CCDS HistoryNCBI Gene:128387Re-query CCDS DB by CCDS ID:53477.1Re-query CCDS DB by GeneID:128387See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53477.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000526641.5 ENSP00000434801.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000526641.5Link to Ensembl Protein Viewer:ENSP00000434801.1Re-query CCDS DB by Nucleotide ID:ENST00000526641Re-query CCDS DB by Protein ID:ENSP00000434801
Original member Current member NCBI NM_001146170.2 NP_001139642.1 Accepted alive Link to Nucleotide Sequence:NM_001146170.2Link to Protein Sequence:NP_001139642.1Re-query CCDS DB by Nucleotide ID:NM_001146170Re-query CCDS DB by Protein ID:NP_001139642Link to BLAST:NP_001139642.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139642.1 253 Q17R31-4 253 100% 0 0

Chromosomal Locations for CCDS 53477.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 212791922 212791987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212795095 212795127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212796517 212796590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212797112 212797196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212804320 212804429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212804596 212804651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212807736 212807848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212812248 212812328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212815013 212815156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGCGAGCGGCTGGCGTAGGCTTGGTGGACTGTCACTGCCACCTCTCCGCCCCGGACTTTGACCGCGATT
TGGATGATGTGTTGGAGAAAGCCAAGAAGGCCAATGTTGTGGCCCTTGTGGCAGTTGCCGAACATTCAGG
AGAATTTGAAAAGATTATGCAACTTTCAGAAAGGTATAATGGGTTTGTCCTGCCATGCTTGGGTGTTCAT
CCAGTTCAAGGACTTCCACCAGAAGACCAAAGAAGTGTCACACTAAAGGTTGGACTAGATTTCTCCCCCA
GATTTGCTGGCACTGGTGAACAGAAGGAAGAGCAAAGACAAGTCCTAATCAGACAGATCCAGTTAGCCAA
AAGACTAAATTTGCCTGTAAATGTGCACTCACGCTCTGCTGGAAGACCTACCATCAACCTTTTACAAGAG
CAAGGTGCTGAGAAGGTACTGCTGCATGCATTTGATGGTCGGCCATCTGTAGCCATGGAAGGAGTAAGAG
CTGGGTACTTCTTCTCAATTCCCCCTTCTATCATAAGAAGTGGACAGAAGCAGAAACTTGTGAAACAATT
GCCTTTAACTTCTATATGCTTAGAAACAGATTCACCTGCACTAGGACCAGAAAAACAGGTACGGAATGAG
CCCTGGAACATTTCTATTTCAGCAGAATATATTGCCCAGGTGAAAGGGATCTCAGTGGAAGAAGTTATAG
AAGTGACGACACAGAATGCATTAAAACTGTTTCCTAAGCTCCGACACTTGCTCCAGAAATAG

Translation (253 aa):
MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYNGFVLPCLGVH
PVQGLPPEDQRSVTLKVGLDFSPRFAGTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQE
QGAEKVLLHAFDGRPSVAMEGVRAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPALGPEKQVRNE
PWNISISAEYIAQVKGISVEEVIEVTTQNALKLFPKLRHLLQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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