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Report for CCDS53504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53504.1 Public Homo sapiens 10 ZNF438 24 110 108 CCDS HistoryNCBI Gene:220929Re-query CCDS DB by CCDS ID:53504.1Re-query CCDS DB by GeneID:220929See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53504.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000538351.6 ENSP00000445461.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538351.6Link to Ensembl Protein Viewer:ENSP00000445461.1Re-query CCDS DB by Nucleotide ID:ENST00000538351Re-query CCDS DB by Protein ID:ENSP00000445461
Original member Current member NCBI NM_001143769.2 NP_001137241.1 Accepted alive Link to Nucleotide Sequence:NM_001143769.2Link to Protein Sequence:NP_001137241.1Re-query CCDS DB by Nucleotide ID:NM_001143769Re-query CCDS DB by Protein ID:NP_001137241Link to BLAST:NP_001137241.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137241.1 779 Q7Z4V0-3 779 100% 0 0

Chromosomal Locations for CCDS 53504.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 30844961 30845573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 30848531 30850257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2340 nt):
ATGCTGCCATGTCATTCACCATCACGCTCTGATCAGGTGAATCTGGGACCCTCCATCAACTCCAAGCTGC
TGGGGATGTCCACCCAGAACTATGCCCTGATGCAGGTTGCTGGCCAGGAGGGGACATTTTCTCTTGTTGC
TCTGCCACATGTTGCCTCAGCTCAGCCAATTCAGAAACCCAGAATGTCCCTACCTGAAAACCTGAAACTT
CCTATTCCTAGATATCAACCCCCTAGAAATAGCAAAGCATCAAGAAAGAAACCCATCCTGATCTTTCCTA
AGAGTGGCTGTAGCAAAGCTCCTGCCCAAACCCAAATGTGTCCTCAGATGTCCCCTTCCCCACCTCACCA
CCCTGAACTCCTGTACAAACCCAGTCCATTTGAGGAAGTACCATCACTAGAGCAAGCCCCAGCCAGCATT
AGCACAGCTGCGCTGACCAATGGAAGTGACCATGGGGACTTGAGACCACCAGTGACCAACACCCATGGCA
GTCTGAACCCTCCTGCTACCCCAGCATCATCCACACCAGAGGAGCCTGCCAAGCAGGACCTCACAGCTCT
TTCAGGGAAAGCACACTTTGTAAGCAAGATAACATCTAGTAAACCTTCTGCTGTTGCCAGTGAAAAATTT
AAAGAACAAGTTGATCTTGCAAAAACCATGACCAATTTATCACCAACCATTCTTGGCAATGCAGTTCAGT
TGATCTCTTCAGTCCCCAAAGGGAAACTGCCAATCCCACCCTACTCAAGAATGAAGACAATGGAGGTTTA
CAAAATCAAATCAGATGCTAACATTGCAGGTTTTTCTTTACCAGGACCTAAGGCCGACTGTGATAAGATA
CCCTCCACCACAGAAGGCTTTAATGCAGCCACCAAGGTGGCAAGCAGGCTACCTGTTCCACAAGTGTCAC
AGCAGAGTGCCTGTGAAAGTGCCTTTTGTCCACCCACCAAACTTGATCTTAACCACAAAACAAAACTGAA
CAGTGGAGCAGCAAAGAGAAAAGGAAGAAAACGGAAGGTACCAGATGAAATTTTGGCATTTCAGGGAAAA
AGGAGGAAATATATCATTAATAAGTGTAGAGATGGTAAAGAAAGAGTAAAAAATGATCCCCAAGAATTCA
GAGACCAAAAGCTGGGGACCCTGAAAAAATACCGTAGCATTATGCCCAAACCTATCATGGTCATACCCAC
TTTGGCCTCCCTGGCTTCTCCAACTACACTACAGTCCCAGATGCTTGGGGGCCTAGGACAGGATGTTTTG
TTAAATAATTCACTCACTCCTAAATATCTTGGCTGTAAGCAAGACAACAGCTCTTCCCCTAAGCCCAGCT
CCGTGTTCAGAAATGGATTCTCTGGCATTAAGAAGCCTTGGCACAGATGTCACGTCTGCAACCACCACTT
CCAGTTCAAACAGCACCTTCGAGACCACATGAATACACACACCAACAGACGCCCTTACAGTTGTCGGATT
TGTCGCAAGTCCTATGTACGTCCTGGCAGCCTGAGCACACACATGAAACTTCATCATGGTGAGAACCGTC
TGAAGAAACTCATGTGTTGTGAGTTTTGTGCAAAAGTGTTTGGCCACATCCGAGTCTATTTTGGCCATCT
GAAAGAAGTGCATAGGGTTGTGATCAGCACTGAGCCTGCGCCCAGTGAACTGCAGCCAGGAGACATACCA
AAGAACAGAGACATGAGTGTGCGAGGCATGGAGGGATCATTGGAGAGGGAAAACAAGTCCAACCTGGAAG
AAGACTTCCTTCTAAACCAGGCAGACGAAGTCAAATTACAAATCAAATGTGGTCGTTGTCAGATTACTGC
TCAGTCTTTTGCGGAAATAAAATTTCATTTACTTGATGTTCATGGAGAGGAAATTGAGGGCAGGCTACAA
GAAGGGACCTTCCCAGGAAGCAAGGGGACTCAGGAAGAGTTGGTGCAGCACGCTAGCCCCGACTGGAAAA
GGCATCCTGAGAGAGGGAAGCCGGAGAAGGTTCATTCCTCCTCCGAGGAATCACATGCATGTCCAAGACT
GAAAAGGCAGCTCCACCTTCATCAGAATGGCGTGGAAATGCTCATGGAAAATGAAGGACCCCAGTCAGGA
ACCAACAAGCCAAGGGAAACCTGCCAGGGCCCTGAGTGTCCTGGCCTCCACACGTTTCTCTTGTGGTCCC
ATTCAGGCTTTAACTGCCTGCTTTGTGCAGAGATGCTGGGACGGAAAGAGGACCTCCTCCACCACTGGAA
GCACCAGCATAACTGTGAGGACCCTTCCAAACTGTGGGCTATTTTAAATACGGTCTCCAACCAGGGAGTG
ATCGAACTTTCCAGTGAAGCTGAGAAATGA

Translation (779 aa):
MLPCHSPSRSDQVNLGPSINSKLLGMSTQNYALMQVAGQEGTFSLVALPHVASAQPIQKPRMSLPENLKL
PIPRYQPPRNSKASRKKPILIFPKSGCSKAPAQTQMCPQMSPSPPHHPELLYKPSPFEEVPSLEQAPASI
STAALTNGSDHGDLRPPVTNTHGSLNPPATPASSTPEEPAKQDLTALSGKAHFVSKITSSKPSAVASEKF
KEQVDLAKTMTNLSPTILGNAVQLISSVPKGKLPIPPYSRMKTMEVYKIKSDANIAGFSLPGPKADCDKI
PSTTEGFNAATKVASRLPVPQVSQQSACESAFCPPTKLDLNHKTKLNSGAAKRKGRKRKVPDEILAFQGK
RRKYIINKCRDGKERVKNDPQEFRDQKLGTLKKYRSIMPKPIMVIPTLASLASPTTLQSQMLGGLGQDVL
LNNSLTPKYLGCKQDNSSSPKPSSVFRNGFSGIKKPWHRCHVCNHHFQFKQHLRDHMNTHTNRRPYSCRI
CRKSYVRPGSLSTHMKLHHGENRLKKLMCCEFCAKVFGHIRVYFGHLKEVHRVVISTEPAPSELQPGDIP
KNRDMSVRGMEGSLERENKSNLEEDFLLNQADEVKLQIKCGRCQITAQSFAEIKFHLLDVHGEEIEGRLQ
EGTFPGSKGTQEELVQHASPDWKRHPERGKPEKVHSSSEESHACPRLKRQLHLHQNGVEMLMENEGPQSG
TNKPRETCQGPECPGLHTFLLWSHSGFNCLLCAEMLGRKEDLLHHWKHQHNCEDPSKLWAILNTVSNQGV
IELSSEAEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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