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Report for CCDS53562.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53562.1 Public Homo sapiens 10 ZFYVE27 24 110 108 CCDS HistoryNCBI Gene:118813Re-query CCDS DB by CCDS ID:53562.1Re-query CCDS DB by GeneID:118813See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53562.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337540.11 ENSP00000337993.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000337540.11Link to Ensembl Protein Viewer:ENSP00000337993.7Re-query CCDS DB by Nucleotide ID:ENST00000337540Re-query CCDS DB by Protein ID:ENSP00000337993
Original member Current member NCBI NM_001174119.2 NP_001167590.1 Accepted alive Link to Nucleotide Sequence:NM_001174119.2Link to Protein Sequence:NP_001167590.1Re-query CCDS DB by Nucleotide ID:NM_001174119Re-query CCDS DB by Protein ID:NP_001167590Link to BLAST:NP_001167590.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167590.1 372 Q5T4F4-8 372 100% 0 0

Chromosomal Locations for CCDS 53562.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 97738478 97738649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97744729 97744915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97748269 97748364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97749474 97749586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97750331 97750470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97751391 97751462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97753038 97753182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97757265 97757311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97757642 97757723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97759236 97759300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGCAGACATCAGAACGTGAGGGGAGTGGGCCGGAGCTGAGCCCCAGCGTGATGCCCGAGGCTCCCCTGG
AGTCTCCACCTTTTCCTACCAAGTCCCCAGCGTTTGACCTTTTCAACTTGGTTCTCTCCTACAAGAGGCT
GGAGATCTACCTGGAACCCTTGAAGGATGCAGGTGCATGGTACTCAGTAGGTGCCCTGATGATTTCAGTG
CCCGCCCTGCTGGGCTACCTTCAGGAGGTTTGCCGGGCACGGCTGCCTGATTCCGAGCTGATGCGGAGGA
AGTATCATAGCGTGAGGCAGGAGGACCTGCAGAGAGGTCGCCTGTCTCGTCCCGAGGCCGTGGCTGAGGT
GAAGAGCTTCTTGATCCAGCTGGAGGCCTTCCTGAGCCGCCTGTGCTGCACATGTGAAGCCGCCTACCGC
GTGCTGCACTGGGAGAACCCCGTCGTGTCCTCACAGTTCTATGGGGCTCTTCTGGGCACAGTCTGCATGC
TGTATTTGCTGCCACTCTGCTGGGTTCTCACCCTTTTAAACAGCACGCTCTTTCTGGGGAATGTGGAGTT
CTTCCGAGTTGTGTCTGAGTACAGGGCATCTCTGCAGCAGAGGATGAACCCAAAGCAGGAAGAGCATGCC
TTTGAGAGTCCTCCACCACCAGATGTTGGGGGGAAGGATGGTCTGATGGACAGCACGCCTGCCCTCACAC
CCACGGAGGACCTCACACCGGGCAGCGTGGAGGAGGCTGAGGAGGCTGAGCCAGATGAAGAGTTTAAAGA
TGCGATTGAGGAGGATGATGAGGGCGCCCCGTGCCCAGCAGAGGATGAGCTGGCCCTGCAGGACAACGGG
TTCCTGAGCAAGAATGAGGTGCTGCGCAGCAAGGTGTCTCGGCTCACGGAGCGGCTCCGCAAGCGCTACC
CCACCAACAACTTCGGGAACTGCACGGGCTGCTCGGCCACCTTCTCAGTGCTGAAGAAGAGGCGGAGCTG
CAGTAATTGTGGAAACAGCTTCTGCTCTCGATGCTGCTCCTTCAAGGTGCCCAAGTCCTCCATGGGGGCC
ACAGCCCCTGAAGCCCAGAGGGAGACTGTGTTTGTGTGTGCCTCGTGTAACCAGACCTTGAGCAAGTGA

Translation (372 aa):
MQTSEREGSGPELSPSVMPEAPLESPPFPTKSPAFDLFNLVLSYKRLEIYLEPLKDAGAWYSVGALMISV
PALLGYLQEVCRARLPDSELMRRKYHSVRQEDLQRGRLSRPEAVAEVKSFLIQLEAFLSRLCCTCEAAYR
VLHWENPVVSSQFYGALLGTVCMLYLLPLCWVLTLLNSTLFLGNVEFFRVVSEYRASLQQRMNPKQEEHA
FESPPPPDVGGKDGLMDSTPALTPTEDLTPGSVEEAEEAEPDEEFKDAIEEDDEGAPCPAEDELALQDNG
FLSKNEVLRSKVSRLTERLRKRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGA
TAPEAQRETVFVCASCNQTLSK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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