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Report for CCDS53593.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53593.2 Public Homo sapiens 11 IFITM10 24 110 108 CCDS HistoryNCBI Gene:402778Re-query CCDS DB by CCDS ID:53593.2Re-query CCDS DB by GeneID:402778See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 53593.2
The coding region has been updated to represent an alternative splicing pattern, resulting in an extended N-terminus that is more supported by the available transcript data and by conservation in primates.

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 53593.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340134.5 ENSP00000344430.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340134.5Link to Ensembl Protein Viewer:ENSP00000344430.4Re-query CCDS DB by Nucleotide ID:ENST00000340134Re-query CCDS DB by Protein ID:ENSP00000344430
Original member Current member NCBI NM_001170820.4 NP_001164291.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001170820.4Link to Protein Sequence:NP_001164291.2Re-query CCDS DB by Nucleotide ID:NM_001170820Re-query CCDS DB by Protein ID:NP_001164291Link to BLAST:NP_001164291.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164291.2 228 A6NMD0 228 100% 0 0

Chromosomal Locations for CCDS 53593.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 1735280 1735429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1747667 1748119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1750359 1750442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGAGGGAGGGAAAACGGGGGCCGCCATGCATCCTCAGCTTCCGGGGGACTTTGGAGAGGGTCGAGGCTC
AGTGGGAGCTGGAGGCCCAGGGCCCCGGCCAGTGCCCAGCCCCGCTGGGAGACCCGGCCAGCACCACGGA
CGGCGCCCAGGAAGCCCGAGTCCCCCTGGACGGGGCCTTCTGGATTCCGAGGCCCCCGGCAGGTTCGCCC
AAGGGCTGCTTCGCTTGCGTGTCCAAGCCCCCTGCCCTGCAGGCTCCGGCGGCCCCTGCCCCTGAGCCCT
CGGCCTCTCCCCCGATGGCGCCCACACTGTTCCCCATGGAGTCCAAGAGCAGCAAGACCGACAGCGTGCG
GGCTGCCGGCGCGCCCCCTGCCTGCAAGCACCTAGCCGAGAAGAAGACGATGACCAACCCCACGACCGTC
ATCGAGGTCTACCCGGACACCACCGAGGTGAACGACTATTACCTGTGGTCCATCTTCAACTTCGTCTACC
TCAACTTCTGCTGCCTGGGCTTCATCGCCTTGGCCTACTCCCTCAAAGTGCGAGACAAGAAGCTTCTCAA
TGACCTGAATGGAGCCGTGGAGGATGCAAAGACGGCCCGGCTGTTCAACATCACCAGTTCTGCCCTGGCA
GCCTCCTGCATCATCCTCGTCTTCATCTTCCTGCGGTACCCCCTCACCGACTACTAA

Translation (228 aa):
MREGKRGPPCILSFRGTLERVEAQWELEAQGPGQCPAPLGDPASTTDGAQEARVPLDGAFWIPRPPAGSP
KGCFACVSKPPALQAPAAPAPEPSASPPMAPTLFPMESKSSKTDSVRAAGAPPACKHLAEKKTMTNPTTV
IEVYPDTTEVNDYYLWSIFNFVYLNFCCLGFIALAYSLKVRDKKLLNDLNGAVEDAKTARLFNITSSALA
ASCIILVFIFLRYPLTDY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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