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Report for CCDS54093.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54093.1 Public Homo sapiens 17 ELAC2 24 110 108 CCDS HistoryNCBI Gene:60528Re-query CCDS DB by CCDS ID:54093.1Re-query CCDS DB by GeneID:60528See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54093.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000426905.7 ENSP00000405223.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000426905.7Link to Ensembl Protein Viewer:ENSP00000405223.3Re-query CCDS DB by Nucleotide ID:ENST00000426905Re-query CCDS DB by Protein ID:ENSP00000405223
Original member Current member NCBI NM_001165962.2 NP_001159434.1 Accepted alive Link to Nucleotide Sequence:NM_001165962.2Link to Protein Sequence:NP_001159434.1Re-query CCDS DB by Nucleotide ID:NM_001165962Re-query CCDS DB by Protein ID:NP_001159434Link to BLAST:NP_001159434.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159434.1 786 Q9BQ52-4 786 100% 0 0

Chromosomal Locations for CCDS 54093.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 12992818 12993045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12993687 12993831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12994425 12994503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12994764 12994884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12994963 12995062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12995703 12995812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12995940 12995978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12996547 12996685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12998412 12998508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13000156 13000274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13002274 13002359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13002441 13002579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13003479 13003574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13004989 13005101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13005753 13005825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13005921 13005979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13010613 13010671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13013207 13013275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13014439 13014496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13015768 13015832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13016862 13016932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13017071 13017121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13017703 13017947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2361 nt):
ATGTGGGCGCTTTGCTCGCTGCTGCGGTCCGCGGCCGGACGCACCATGTCGCAGGGACGCACCATATCGC
AGGCACCCGCCCGCCGCGAGCGGCCGCGCAAGGACCCGCTGCGGCACCTGCGCACGCGAGAGAAGCGCGG
ACCGTCGGGGTGCTCCGGCGGCCCAAACACCGTGTACCTGCAGGTGGTGGCAGCGGGTAGCCGGGACTCG
GGCGCCGCGCTCTACGTCTTCTCCGAGTTCAACCGGTATCTCTTCAACTGTGGAGAAGGCGTTCAGAGAC
TCATGCAGGAGCACAAGTTAAAGGTTGCTCGCCTGGACAACATATTCCTGACACGAATGCACTGGTCTAA
TGTTGGGGGCTTAAGTGGAATGATTCTTACTTTAAAGGAAACCGGGCTTCCAAAGTGTGTACTTTCTGGA
CCTCCACAACTGGAAAAATACCTCGAAGCAATCAAAATATTTTCTGGTCCATTGAAAGGAATAGAACTGG
CTGTGCGGCCCCACTCTGCCCCAGAATACGAGGATGAAACCATGACAGTTTACCAGATCCCCATACACAG
TGTTAGCCAGAGAAGAGGGGTCAGGGACTCTTCCCTGGTCGTAGCTTTCATCTGTAAGCTTCACTTAAAG
AGAGGAAACTTCTTGGTGCTCAAAGCAAAGGAGATGGGCCTCCCAGTTGGGACAGCTGCCATCGCTCCCA
TCATTGCTGCTGTCAAGGACGGGAAAAGCATCACTCATGAAGGAAGAGAGATTTTGGCTGAAGAGCTGTG
TACTCCTCCAGATCCTGGTGCTGCTTTTGTGGTGGTAGAATGTCCAGATGAAAGCTTCATTCAACCCATC
TGTGAGAATGCCACCTTTCAGAGGTACCAAGGAAAGGCAGATGCCCCCGTGGCCTTGGTGGTTCACATGG
CCCCAGCATCTGTGCTTGTGGACAGCAGGTACCAGCAGTGGATGGAGAGGTTTGGGCCTGACACCCAGCA
CTTGGTCCTGAATGAGAACTGTGCCTCAGTTCACAACCTTCGCAGCCACAAGATTCAAACCCAGCTCAAC
CTCATCCACCCGGACATCTTCCCCCTGCTCACCAGTTTCCGCTGTAAGAAGGAGGGCCCCACCCTCAGTG
TGCCCATGGTTCAGGGTGAATGCCTCCTCAAGTACCAGCTCCGTCCCAGGAGGGAGTGGCAGAGGGATGC
CATTATTACTTGCAATCCTGAGGAATTCATAGTTGAGGCGCTGCAGCTTCCCAACTTCCAGCAGAGCGTG
CAGGAGTACAGGAGGAGTGCGCAGGACGGCCCAGCCCCAGCAGAGAAAAGAAGTCAGTACCCAGAAATCA
TCTTCCTTGGAACAGGGTCTGCCATCCCGATGAAGATTCGAAATGTCAGTGCCACACTTGTCAACATAAG
CCCCGACACGTCTCTGCTACTGGACTGTGGTGAGGGCACATTTGGGCAGCTGTGCCGTCATTACGGAGAC
CAGGTGGACAGGGTCCTGGGCACCCTGGCTGCTGTGTTTGTGTCCCACCTGCACGCAGATCACCACACGG
GCTTGCCAAGTATCTTGCTGCAGAGAGAACGCGCCTTGGCATCTTTGGGAAAGCCGCTTCACCCTTTGCT
GGTGGTTGCCCCCAACCAGCTCAAAGCCTGGCTCCAGCAGTACCACAACCAGTGCCAGGAGGTCCTGCAC
CACATCAGTATGATTCCTGCCAAATGCCTTCAGGAAGGGGCTGAGATCTCCAGTCCTGCAGTGGAAAGAT
TGATCAGTTCGCTGTTGCGAACATGTGATTTGGAAGAGTTTCAGACCTGTCTGGTGCGGCACTGCAAGCA
TGCGTTTGGCTGTGCGCTGGTGCACACCTCTGGCTGGAAAGTGGTCTATTCCGGGGACACCATGCCCTGC
GAGGCTCTGGTCCGGATGGGGAAAGATGCCACCCTCCTGATACATGAAGCCACCCTGGAAGATGGTTTGG
AAGAGGAAGCAGTGGAAAAGACACACAGCACAACGTCCCAAGCCATCAGCGTGGGGATGCGGATGAACGC
GGAGTTCATTATGCTGAACCACTTCAGCCAGCGCTATGCCAAGGTCCCCCTCTTCAGCCCCAACTTCAGC
GAGAAAGTGGGAGTTGCCTTTGACCACATGAAGGTCTGCTTTGGAGACTTTCCAACAATGCCCAAGCTGA
TTCCCCCACTGAAAGCCCTGTTTGCTGGCGACATCGAGGAGATGGAGGAGCGCAGGGAGAAGCGGGAGCT
GCGGCAGGTGCGGGCGGCCCTCCTGTCCAGGGAGCTGGCAGGCGGCCTGGAGGATGGGGAGCCTCAGCAG
AAGCGGGCCCACACAGAGGAGCCACAGGCCAAGAAGGTCAGAGCCCAGTGA

Translation (786 aa):
MWALCSLLRSAAGRTMSQGRTISQAPARRERPRKDPLRHLRTREKRGPSGCSGGPNTVYLQVVAAGSRDS
GAALYVFSEFNRYLFNCGEGVQRLMQEHKLKVARLDNIFLTRMHWSNVGGLSGMILTLKETGLPKCVLSG
PPQLEKYLEAIKIFSGPLKGIELAVRPHSAPEYEDETMTVYQIPIHSVSQRRGVRDSSLVVAFICKLHLK
RGNFLVLKAKEMGLPVGTAAIAPIIAAVKDGKSITHEGREILAEELCTPPDPGAAFVVVECPDESFIQPI
CENATFQRYQGKADAPVALVVHMAPASVLVDSRYQQWMERFGPDTQHLVLNENCASVHNLRSHKIQTQLN
LIHPDIFPLLTSFRCKKEGPTLSVPMVQGECLLKYQLRPRREWQRDAIITCNPEEFIVEALQLPNFQQSV
QEYRRSAQDGPAPAEKRSQYPEIIFLGTGSAIPMKIRNVSATLVNISPDTSLLLDCGEGTFGQLCRHYGD
QVDRVLGTLAAVFVSHLHADHHTGLPSILLQRERALASLGKPLHPLLVVAPNQLKAWLQQYHNQCQEVLH
HISMIPAKCLQEGAEISSPAVERLISSLLRTCDLEEFQTCLVRHCKHAFGCALVHTSGWKVVYSGDTMPC
EALVRMGKDATLLIHEATLEDGLEEEAVEKTHSTTSQAISVGMRMNAEFIMLNHFSQRYAKVPLFSPNFS
EKVGVAFDHMKVCFGDFPTMPKLIPPLKALFAGDIEEMEERREKRELRQVRAALLSRELAGGLEDGEPQQ
KRAHTEEPQAKKVRAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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