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Report for CCDS54267.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54267.1 Public Homo sapiens 19 LGALS16 24 110 108 CCDS HistoryNCBI Gene:148003Re-query CCDS DB by CCDS ID:54267.1Re-query CCDS DB by GeneID:148003See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54267.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392051.4 ENSP00000375904.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392051.4Link to Ensembl Protein Viewer:ENSP00000375904.2Re-query CCDS DB by Nucleotide ID:ENST00000392051Re-query CCDS DB by Protein ID:ENSP00000375904
Original member Current member NCBI NM_001190441.3 NP_001177370.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001190441.3Link to Protein Sequence:NP_001177370.2Re-query CCDS DB by Nucleotide ID:NM_001190441Re-query CCDS DB by Protein ID:NP_001177370Link to BLAST:NP_001177370.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177370.2 142 A8MUM7 142 100% 0 0

Chromosomal Locations for CCDS 54267.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 39655962 39655976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39657883 39657959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39658460 39658670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39660395 39660520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGTCATTTCTAACTGTGCCATACAAACTGCCTGTGTCTTTGTCTGTTGGTTCCTGCGTGATAATCAAAG
GGACACTGATCGACTCTTCTATCAACGAACCACAGCTGCAGGTGGATTTCTACACTGAGATGAATGAGGA
CTCAGAAATTGCCTTCCATTTGCGAGTGCACTTAGGCCGTCGTGTGGTCATGAACAGTCGTGAGTTTGGG
ATATGGATGTTGGAGGAGAATTTACACTATGTGCCCTTTGAGGATGGCAAACCATTTGACTTGCGCATCT
ACGTGTGTCACAATGAGTATGAGGTAAAGGTAAATGGTGAATACATTTATGCCTTTGTCCATCGAATCCC
GCCATCATATGTGAAGATGATTCAAGTGTGGAGAGATGTCTCCCTGGACTCAGTGCTTGTCAACAATGGA
CGGAGATGA

Translation (142 aa):
MSFLTVPYKLPVSLSVGSCVIIKGTLIDSSINEPQLQVDFYTEMNEDSEIAFHLRVHLGRRVVMNSREFG
IWMLEENLHYVPFEDGKPFDLRIYVCHNEYEVKVNGEYIYAFVHRIPPSYVKMIQVWRDVSLDSVLVNNG
RR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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