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Report for CCDS54324.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54324.1 Public Homo sapiens 19 ZNF548 24 110 108 CCDS HistoryNCBI Gene:147694Re-query CCDS DB by CCDS ID:54324.1Re-query CCDS DB by GeneID:147694See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54324.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336128.12 ENSP00000337555.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336128.12Link to Ensembl Protein Viewer:ENSP00000337555.6Re-query CCDS DB by Nucleotide ID:ENST00000336128Re-query CCDS DB by Protein ID:ENSP00000337555
Original member Current member NCBI NM_001172773.2 NP_001166244.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001172773.2Link to Protein Sequence:NP_001166244.1Re-query CCDS DB by Nucleotide ID:NM_001172773Re-query CCDS DB by Protein ID:NP_001166244Link to BLAST:NP_001166244.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166244.1 545 Q8NEK5-2 545 100% 0 0

Chromosomal Locations for CCDS 54324.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 57390100 57390114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57394188 57394223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57397048 57397174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57398430 57399889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1638 nt):
ATGAACCTGACTGAGGGTCCCCTGGCGATGGCAGAAATGGACCCTACACAGGGCCGTGTGGTCTTTGAGG
ACGTGGCCATATATTTCTCCCAGGAGGAGTGGGGGCACCTTGATGAGGCTCAGAGATTGCTGTACCGTGA
TGTGATGCTGGAGAATTTGGCCCTTTTGTCCTCACTAGGTTCTTGGCATGGAGCTGAGGATGAGGAGGCA
CCTTCACAGCAAGGTTTTTCTGTAGGAGTGTCAGAGGTTACAGCTTCAAAGCCCTGTCTGTCCAGCCAGA
AGGTCCACCCTAGTGAGACATGTGGCCCACCCTTGAAAGACATTCTGTGCCTGGTTGAGCACAATGGAAT
TCATCCTGAGCAACACATATATATTTGTGAGGCAGAGCTTTTTCAGCACCCAAAGCAGCAAATTGGAGAA
AATCTTTCCAGAGGGGATGATTGGATACCTTCATTTGGGAAGAACCACAGAGTTCACATGGCAGAGGAGA
TCTTCACATGCATGGAGGGCTGGAAGGACTTACCAGCCACCTCATGCCTTCTCCAGCACCAGGGCCCTCA
AAGCGAGTGGAAGCCATACAGGGACACAGAGGACAGAGAAGCCTTTCAGACTGGACAAAATGATTACAAA
TGTAGTGAATGTGGGAAAACCTTCACCTGCAGCTATTCATTTGTTGAGCACCAGAAAATCCACACAGGAG
AAAGGTCTTATGAATGTAACAAATGTGGGAAATTCTTTAAGTACAGTGCCAATTTCATGAAACATCAGAC
AGTTCACACTAGTGAAAGGACTTATGAGTGCAGAGAATGTGGAAAATCCTTTATGTACAACTACCGACTC
ATGAGACATAAGCGAGTTCACACTGGAGAAAGGCCTTATGAGTGCAACACATGTGGGAAATTCTTTCGGT
ACAGCTCCACATTTGTTAGACATCAGAGAGTTCACACCGGAGAAAGGCCGTATGAGTGCAGGGAATGTGG
GAAATTCTTTATGGACAGCTCCACACTCATTAAACATCAGAGAGTTCACACCGGAGAAAGACCTTATAAG
TGCAATGATTGTGGGAAATTTTTTAGGTATATCTCCACACTCATTAGACATCAGAGAATTCACACTGGAG
AAAGGCCTTATGAGTGCAGTGTATGTGGGGAATTGTTTAGGTACAACTCCAGCCTTGTTAAACATTGGAG
AAATCACACTGGAGAAAGGCCTTATAAATGCAGTGAATGTGGGAAATCATTTAGGTACCACTGCAGGCTC
ATTAGACACCAGAGAGTCCACACGGGAGAAAGGCCTTATGAGTGCAGCGAATGCGGGAAATTCTTTCGTT
ACAACTCCAACCTCATTAAACATTGGAGAAATCACACTGGAGAAAGGCCTTACGAGTGCAGAGAGTGTGG
GAAAGCCTTTAGCCACAAGCATATACTTGTTGAGCACCAGAAAATCCACAGTGGAGAAAGACCTTATGAG
TGCAGCGAATGCCAGAAGGCCTTTATTAGAAAGTCTCACCTGGTTCATCACCAGAAAATCCACAGTGAAG
AGAGGCTTGTGTGCTCCATGAATGTGGGGAATTCTTTAGCTAAAACTCCAACCTCATTAAACATCAGAGA
TTTCACAATGGAGAAAGTTTACCATTGA

Translation (545 aa):
MNLTEGPLAMAEMDPTQGRVVFEDVAIYFSQEEWGHLDEAQRLLYRDVMLENLALLSSLGSWHGAEDEEA
PSQQGFSVGVSEVTASKPCLSSQKVHPSETCGPPLKDILCLVEHNGIHPEQHIYICEAELFQHPKQQIGE
NLSRGDDWIPSFGKNHRVHMAEEIFTCMEGWKDLPATSCLLQHQGPQSEWKPYRDTEDREAFQTGQNDYK
CSECGKTFTCSYSFVEHQKIHTGERSYECNKCGKFFKYSANFMKHQTVHTSERTYECRECGKSFMYNYRL
MRHKRVHTGERPYECNTCGKFFRYSSTFVRHQRVHTGERPYECRECGKFFMDSSTLIKHQRVHTGERPYK
CNDCGKFFRYISTLIRHQRIHTGERPYECSVCGELFRYNSSLVKHWRNHTGERPYKCSECGKSFRYHCRL
IRHQRVHTGERPYECSECGKFFRYNSNLIKHWRNHTGERPYECRECGKAFSHKHILVEHQKIHSGERPYE
CSECQKAFIRKSHLVHHQKIHSEERLVCSMNVGNSLAKTPTSLNIRDFTMEKVYH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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