NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5434.1 Public Homo sapiens 7 NEUROD6 24 110 108 CCDS HistoryNCBI Gene:63974Re-query CCDS DB by CCDS ID:5434.1Re-query CCDS DB by GeneID:63974See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5434.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297142.4 ENSP00000297142.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297142.4Link to Ensembl Protein Viewer:ENSP00000297142.3Re-query CCDS DB by Nucleotide ID:ENST00000297142Re-query CCDS DB by Protein ID:ENSP00000297142
Original member Current member NCBI NM_022728.4 NP_073565.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022728.4Link to Protein Sequence:NP_073565.2Re-query CCDS DB by Nucleotide ID:NM_022728Re-query CCDS DB by Protein ID:NP_073565Link to BLAST:NP_073565.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_073565.2 337 Q96NK8 337 100% 0 0

Chromosomal Locations for CCDS 5434.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 31338255 31339268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGTTAACACTACCGTTTGATGAGTCTGTTGTAATGCCAGAATCCCAGATGTGCAGAAAGTTTTCTAGAG
AATGCGAGGACCAGAAGCAAATTAAGAAGCCAGAAAGCTTTTCCAAACAGATTGTCCTTCGAGGAAAGAG
CATCAAAAGGGCCCCTGGAGAAGAAACCGAGAAAGAAGAAGAGGAGGAAGACAGGGAAGAGGAAGATGAA
AATGGGTTGCCTAGAAGGAGGGGTCTTAGGAAAAAAAAGACAACAAAGCTGCGATTGGAAAGGGTCAAGT
TCAGGAGACAGGAAGCGAACGCGCGCGAGAGGAACAGGATGCACGGCCTCAACGACGCTCTGGACAACTT
AAGAAAAGTGGTCCCCTGTTATTCTAAAACCCAGAAACTGTCCAAAATAGAGACTTTACGACTGGCCAAA
AACTACATCTGGGCACTTTCTGAAATTCTGAGAATCGGCAAGAGACCAGATCTGCTCACATTCGTCCAAA
ACTTATGCAAAGGTCTTTCCCAGCCAACTACAAACTTGGTGGCAGGCTGCTTGCAGCTCAACGCCAGGAG
TTTCCTGATGGGTCAGGGTGGGGAGGCTGCACACCACACAAGGTCACCCTACTCTACCTTCTACCCACCC
TACCACAGCCCTGAGCTCACCACTCCCCCAGGGCATGGGACTCTTGATAATTCCAAGTCCATGAAACCCT
ACAATTATTGCAGTGCGTATGAATCCTTCTATGAAAGTACTTCCCCTGAGTGTGCCAGCCCTCAGTTTGA
AGGTCCCTTAAGTCCTCCCCCAATTAACTATAATGGGATATTTTCCCTGAAGCAAGAAGAAACCTTGGAC
TATGGTAAAAATTACAATTACGGCATGCATTACTGTGCAGTGCCACCCAGGGGTCCCCTTGGGCAGGGTG
CCATGTTCAGGTTGCCCACCGACAGCCACTTCCCTTACGACTTACATCTGCGCAGCCAATCTCTCACAAT
GCAAGATGAATTAAATGCAGTTTTTCATAATTAA

Translation (337 aa):
MLTLPFDESVVMPESQMCRKFSRECEDQKQIKKPESFSKQIVLRGKSIKRAPGEETEKEEEEEDREEEDE
NGLPRRRGLRKKKTTKLRLERVKFRRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAK
NYIWALSEILRIGKRPDLLTFVQNLCKGLSQPTTNLVAGCLQLNARSFLMGQGGEAAHHTRSPYSTFYPP
YHSPELTTPPGHGTLDNSKSMKPYNYCSAYESFYESTSPECASPQFEGPLSPPPINYNGIFSLKQEETLD
YGKNYNYGMHYCAVPPRGPLGQGAMFRLPTDSHFPYDLHLRSQSLTMQDELNAVFHN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH