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Report for CCDS54397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54397.1 Public Homo sapiens 2 SAP130 24 110 108 CCDS HistoryNCBI Gene:79595Re-query CCDS DB by CCDS ID:54397.1Re-query CCDS DB by GeneID:79595See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 54397.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357702.9 ENSP00000350333.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357702.9Link to Ensembl Protein Viewer:ENSP00000350333.5Re-query CCDS DB by Nucleotide ID:ENST00000357702Re-query CCDS DB by Protein ID:ENSP00000350333
Original member Current member NCBI NM_001145928.2 NP_001139400.1 Accepted alive Link to Nucleotide Sequence:NM_001145928.2Link to Protein Sequence:NP_001139400.1Re-query CCDS DB by Nucleotide ID:NM_001145928Re-query CCDS DB by Protein ID:NP_001139400Link to BLAST:NP_001139400.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139400.1 1083 Q9H0E3-3 1083 100% 0 0

Chromosomal Locations for CCDS 54397.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 127942006 127942164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127942424 127942537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127945456 127945559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127949869 127949994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127950160 127950408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127954986 127955344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127977985 127978089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127986785 127986962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127989564 127989866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127993187 127993308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127996350 127996491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127999741 127999845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128000056 128000146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128000307 128000454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128010269 128010393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128013030 128013154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128014803 128014914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128016389 128016547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128017680 128017915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128026181 128026298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128027092 128027163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3252 nt):
ATGGGCCCTCCGCGGCACCCCCAGGCCGGCGAGATAGAAGCGGGCGGTGCGGGCGGCGGGCGGCGGCTAC
AGGTGGAAATGAGTTCTCAACAGTTTCCTCGGTTAGGAGCCCCTTCTACCGGGCTGAGCCAGGCCCCTTC
TCAGATTGCAAACAGTGGTTCTGCTGGATTGATAAACCCAGCTGCTACAGTCAATGATGAATCTGGTCGA
GATTCTGAAGTCAGTGCCAGGGAGCACATGAGTTCCAGCAGCTCCCTCCAGTCCCGGGAGGAGAAGCAAG
AGCCTGTTGTGGTAAGGCCCTATCCACAGGTGCAGATGTTGTCGACACACCATGCTGTCGCATCAGCCAC
ACCTGTTGCAGTGACAGCCCCGCCAGCACACCTGACGCCAGCAGTGCCACTTTCATTTTCGGAGGGACTT
ATGAAGCCGCCCCCGAAGCCCACCATGCCTAGCCGTCCCATTGCTCCTGCTCCACCTTCTACCCTGTCAC
TTCCCCCCAAGGTTCCAGGGCAGGTTACCGTTACCATGGAGAGTAGCATCCCTCAAGCTTCAGCCATTCC
TGTGGCAACAATCAGTGGACAACAGGGCCATCCCAGTAACCTGCATCACATCATGACTACAAATGTGCAA
ATGTCTATCATCCGCAGCAATGCTCCTGGGCCCCCTCTTCACATTGGAGCTTCTCATTTACCTCGAGGTG
CAGCTGCTGCTGCTGTGATGTCCAGTTCTAAAGTAACCACAGTCCTGAGGCCGACCTCACAGCTGCCAAA
TGCTGCTACTGCTCAGCCAGCAGTACAGCACATCATTCACCAACCAATCCAGTCTCGGCCACCTGTGACC
ACCTCCAATGCCATCCCTCCTGCTGTGGTAGCAACTGTCTCAGCCACCAGAGCTCAGTCTCCAGTCATCA
CTACGACAGCGGCGCATGCTACTGATTCAGCACTTAGTAGGCCAACCTTGTCTATCCAGCATCCTCCATC
TGCAGCAATCAGTATTCAGCGTCCTGCCCAGTCACGAGATGTCACAACAAGAATCACACTACCATCTCAC
CCTGCATTAGGGACGCCAAAACAGCAGCTTCATACAATGGCTCAGAAAACAATCTTCAGTACTGGCACGC
CAGTGGCTGCAGCCACAGTAGCACCTATTTTGGCAACCAACACCATTCCTTCAGCGACCACAGCTGGATC
TGTGTCACACACGCAAGCTCCCACAAGTACCATTGTTACCATGACAGTACCCTCCCATTCCTCCCATGCT
ACTGCTGTGACCACCTCAAACATCCCAGTCGCCAAGGTGGTGCCCCAGCAGATCACGCACACTTCTCCTC
GGATCCAGCCAGACTACCCTGCCGAGAGGAGTAGCCTGATTCCCATCTCCGGACATCGGGCCTCTCCCAA
TCCTGTGGCCATGGAAACCCGAAGTGACAACAGACCGTCTGTTCCCGTTCAGTTCCAATATTTTTTGCCA
ACTTACCCCCCTTCTGCATACCCACTGGCGGCACATACCTACACCCCAATCACCAGTTCCGTGTCCACTA
TCCGACAGTATCCAGTTTCAGCTCAGGCTCCAAACTCTGCCATCACAGCTCAGACTGGTGTTGGGGTAGC
GTCTACCGTCCACCTAAACCCCATGCAGTTGATGACAGTGGATGCATCGCATGCTCGACATATTCAAGGG
ATCCAGCCAGCACCCATCAGTACCCAGGGTATCCAGCCGGCCCCCATTGGGACCCCAGGGATACAGCCTG
CACCACTTGGCACACAGGGAATTCACTCAGCAACCCCAATCAACACACAAGGGCTTCAGCCTGCACCTAT
GGGTACTCAGCAGCCTCAGCCTGAAGGAAAGACTTCAGCAGTGGTGTTGGCAGATGGAGCCACAATTGTG
GCCAACCCTATTAGCAATCCATTCAGTGCTGCTCCAGCAGCAACAACCGTGGTGCAGACCCACAGCCAGA
GTGCTAGCACCAACGCTCCCGCCCAGGGCTCATCGCCACGGCCAAGCATACTCCGGAAGAAACCTGCCAC
AGATGGAATGGCAGTTCGGAAAACCCTCATTCCTCCTCAGCCTCCTGATGTTGCTAGTCCTCGAGTGGAA
AGCTCTATGCGGAGTACGTCTGGGTCACCTAGGCCTGCAGGTGCCAAACCCAAGTCTGAAATCCACGTGT
CTATGGCCACTCCGGTCACTGTGTCCATGGAGACTGTATCCAATCAAAATAATGATCAGCCTACCATTGC
CGTCCCTCCAACTGCCCAGCAGCCCCCACCGACCATTCCAACTATGATTGCAGCAGCCAGTCCCCCGTCA
CAACCAGCCGTTGCCCTTTCAACCATTCCTGGAGCGGTCCCCATCACTCCACCCATCACCACCATTGCAG
CTGCACCACCTCCATCAGTCACTGTGGGTGGCAGTCTTTCCTCCGTCTTGGGCCCTCCCGTTCCTGAAAT
TAAAGTGAAAGAAGAAGTAGAACCAATGGATATCATGAGGCCAGTTTCTGCAGTTCCTCCACTGGCTACC
AACACTGTGTCTCCATCTCTTGCATTGCTGGCAAACAACTTGTCCATGCCTACAAGTGACCTACCACCTG
GTGCCTCCCCAAGGAAAAAGCCTCGAAAGCAACAGCATGTGATCTCAACAGAAGAAGGTGACATGATGGA
GACAAACAGCACTGATGATGAGAAGTCCACTGCCAAGAGTCTTCTGGTGAAGGCTGAGAAGCGCAAGTCT
CCTCCCAAGGAGTATATTGATGAGGAAGGTGTGAGATATGTCCCAGTGCGTCCAAGACCCCCCATTACTT
TGCTTCGTCACTATCGGAACCCCTGGAAAGCTGCTTACCACCACTTTCAGAGGTACAGTGACGTCCGGGT
CAAAGAGGAGAAGAAAGCTATGCTGCAGGAAATAGCTAATCAGAAAGGAGTATCCTGTCGTGCTCAAGGC
TGGAAAGTCCACCTCTGTGCTGCCCAGTTACTACAGCTGACGAATCTAGAACATGATGTCTATGAAAGAC
TTACTAACCTGCAGGAAGGGATTATCCCAAAGAAAAAAGCAGCAACAGATGATGATCTCCACCGAATAAA
CGAACTGATACAGGGAAATATGCAGAGGTGTAAACTTGTGATGGATCAAATCAGTGAAGCCAGAGACTCC
ATGCTTAAGGTTTTAGATCATAAAGACCGTGTCCTGAAGCTGCTTAACAAGAACGGGACTGTCAAAAAAG
TGTCCAAATTGAAGCGAAAGGAAAAAGTCTAG

Translation (1083 aa):
MGPPRHPQAGEIEAGGAGGGRRLQVEMSSQQFPRLGAPSTGLSQAPSQIANSGSAGLINPAATVNDESGR
DSEVSAREHMSSSSSLQSREEKQEPVVVRPYPQVQMLSTHHAVASATPVAVTAPPAHLTPAVPLSFSEGL
MKPPPKPTMPSRPIAPAPPSTLSLPPKVPGQVTVTMESSIPQASAIPVATISGQQGHPSNLHHIMTTNVQ
MSIIRSNAPGPPLHIGASHLPRGAAAAAVMSSSKVTTVLRPTSQLPNAATAQPAVQHIIHQPIQSRPPVT
TSNAIPPAVVATVSATRAQSPVITTTAAHATDSALSRPTLSIQHPPSAAISIQRPAQSRDVTTRITLPSH
PALGTPKQQLHTMAQKTIFSTGTPVAAATVAPILATNTIPSATTAGSVSHTQAPTSTIVTMTVPSHSSHA
TAVTTSNIPVAKVVPQQITHTSPRIQPDYPAERSSLIPISGHRASPNPVAMETRSDNRPSVPVQFQYFLP
TYPPSAYPLAAHTYTPITSSVSTIRQYPVSAQAPNSAITAQTGVGVASTVHLNPMQLMTVDASHARHIQG
IQPAPISTQGIQPAPIGTPGIQPAPLGTQGIHSATPINTQGLQPAPMGTQQPQPEGKTSAVVLADGATIV
ANPISNPFSAAPAATTVVQTHSQSASTNAPAQGSSPRPSILRKKPATDGMAVRKTLIPPQPPDVASPRVE
SSMRSTSGSPRPAGAKPKSEIHVSMATPVTVSMETVSNQNNDQPTIAVPPTAQQPPPTIPTMIAAASPPS
QPAVALSTIPGAVPITPPITTIAAAPPPSVTVGGSLSSVLGPPVPEIKVKEEVEPMDIMRPVSAVPPLAT
NTVSPSLALLANNLSMPTSDLPPGASPRKKPRKQQHVISTEEGDMMETNSTDDEKSTAKSLLVKAEKRKS
PPKEYIDEEGVRYVPVRPRPPITLLRHYRNPWKAAYHHFQRYSDVRVKEEKKAMLQEIANQKGVSCRAQG
WKVHLCAAQLLQLTNLEHDVYERLTNLQEGIIPKKKAATDDDLHRINELIQGNMQRCKLVMDQISEARDS
MLKVLDHKDRVLKLLNKNGTVKKVSKLKRKEKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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