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Report for CCDS54689.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54689.1 Public Homo sapiens 3 FAM131A 24 110 108 CCDS HistoryNCBI Gene:131408Re-query CCDS DB by CCDS ID:54689.1Re-query CCDS DB by GeneID:131408See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54689.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340957.9 ENSP00000340974.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340957.9Link to Ensembl Protein Viewer:ENSP00000340974.5Re-query CCDS DB by Nucleotide ID:ENST00000340957Re-query CCDS DB by Protein ID:ENSP00000340974
Original member Current member EBI ENST00000450976.5 ENSP00000388551.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000450976.5Link to Ensembl Protein Viewer:ENSP00000388551.1Re-query CCDS DB by Nucleotide ID:ENST00000450976Re-query CCDS DB by Protein ID:ENSP00000388551
Original member Current member EBI ENST00000453072.5 ENSP00000390588.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000453072.5Link to Ensembl Protein Viewer:ENSP00000390588.1Re-query CCDS DB by Nucleotide ID:ENST00000453072Re-query CCDS DB by Protein ID:ENSP00000390588
Original member Current member NCBI NM_001171093.2 NP_001164564.1 Accepted alive Link to Nucleotide Sequence:NM_001171093.2Link to Protein Sequence:NP_001164564.1Re-query CCDS DB by Nucleotide ID:NM_001171093Re-query CCDS DB by Protein ID:NP_001164564Link to BLAST:NP_001164564.1
Original member Current member NCBI NM_001366133.1 NP_001353062.1 Accepted alive Link to Nucleotide Sequence:NM_001366133.1Link to Protein Sequence:NP_001353062.1Re-query CCDS DB by Nucleotide ID:NM_001366133Re-query CCDS DB by Protein ID:NP_001353062Link to BLAST:NP_001353062.1
Original member Current member NCBI NM_001366134.1 NP_001353063.1 Accepted alive Link to Nucleotide Sequence:NM_001366134.1Link to Protein Sequence:NP_001353063.1Re-query CCDS DB by Nucleotide ID:NM_001366134Re-query CCDS DB by Protein ID:NP_001353063Link to BLAST:NP_001353063.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164564.1 281 Q6UXB0-2 281 100% 0 0
NP_001353062.1 281 Q6UXB0-2 281 100% 0 0
NP_001353063.1 281 Q6UXB0-2 281 100% 0 0

Chromosomal Locations for CCDS 54689.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 184341748 184341817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184342066 184342248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184342744 184342860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184344495 184344970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (846 nt):
ATGCTGCCCAAGTCCCGGCGAGCCCTAACTATCCAGGAGATCGCTGCGCTGGCCAGGTCCTCCCTGCATG
GTATTTCCCAGGTGGTGAAGGACCACGTGACCAAGCCTACCGCCATGGCCCAGGGCCGAGTGGCTCACCT
CATTGAGTGGAAGGGCTGGAGCAAGCCGAGTGACTCACCTGCTGCCCTGGAATCAGCCTTTTCCTCCTAT
TCAGACCTCAGCGAGGGCGAACAAGAGGCTCGCTTTGCAGCAGGAGTGGCTGAGCAGTTTGCCATCGCGG
AAGCCAAGCTCCGAGCATGGTCTTCGGTGGATGGCGAGGACTCCACTGATGACTCCTATGATGAGGACTT
TGCTGGGGGAATGGACACAGACATGGCTGGGCAGCTGCCCCTGGGGCCGCACCTCCAGGACCTGTTCACC
GGCCACCGGTTCTCCCGGCCTGTGCGCCAGGGCTCCGTGGAGCCTGAGAGCGACTGCTCACAGACCGTGT
CCCCAGACACCCTGTGCTCTAGTCTGTGCAGCCTGGAGGATGGGTTGTTGGGCTCCCCGGCCCGGCTGGC
CTCCCAGCTGCTGGGCGATGAGCTGCTTCTCGCCAAACTGCCCCCCAGCCGGGAAAGTGCCTTCCGCAGC
CTGGGCCCACTGGAGGCCCAGGACTCACTCTACAACTCGCCCCTCACAGAGTCCTGCCTTTCCCCCGCGG
AGGAGGAGCCAGCCCCCTGCAAGGACTGCCAGCCACTCTGCCCACCACTAACGGGCAGCTGGGAACGGCA
GCGGCAAGCCTCTGACCTGGCCTCTTCTGGGGTGGTGTCCTTAGATGAGGATGAGGCAGAGCCAGAGGAA
CAGTGA

Translation (281 aa):
MLPKSRRALTIQEIAALARSSLHGISQVVKDHVTKPTAMAQGRVAHLIEWKGWSKPSDSPAALESAFSSY
SDLSEGEQEARFAAGVAEQFAIAEAKLRAWSSVDGEDSTDDSYDEDFAGGMDTDMAGQLPLGPHLQDLFT
GHRFSRPVRQGSVEPESDCSQTVSPDTLCSSLCSLEDGLLGSPARLASQLLGDELLLAKLPPSRESAFRS
LGPLEAQDSLYNSPLTESCLSPAEEEPAPCKDCQPLCPPLTGSWERQRQASDLASSGVVSLDEDEAEPEE
Q


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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