NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54854.1 Public Homo sapiens 5 DDX4 24 110 108 CCDS HistoryNCBI Gene:54514Re-query CCDS DB by CCDS ID:54854.1Re-query CCDS DB by GeneID:54514See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 54854.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000514278.6 ENSP00000425359.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000514278.6Link to Ensembl Protein Viewer:ENSP00000425359.2Re-query CCDS DB by Nucleotide ID:ENST00000514278Re-query CCDS DB by Protein ID:ENSP00000425359
Original member Current member NCBI NM_001166533.2 NP_001160005.1 Accepted alive Link to Nucleotide Sequence:NM_001166533.2Link to Protein Sequence:NP_001160005.1Re-query CCDS DB by Nucleotide ID:NM_001166533Re-query CCDS DB by Protein ID:NP_001160005Link to BLAST:NP_001160005.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001160005.1 704 Q9NQI0-4 704 100% 0 0

Chromosomal Locations for CCDS 54854.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 55738964 55739032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55746164 55746221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55760200 55760277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55763175 55763252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55764014 55764064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55779964 55780065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55781066 55781146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55781934 55781981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55785297 55785344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55785447 55785494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55785729 55785871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55786518 55786670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55787846 55788000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55790576 55790705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55792641 55792807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55798426 55798571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55813673 55813772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55814901 55815171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55815313 55815423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55816463 55816540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2115 nt):
ATGGGAGATGAAGATTGGGAAGCAGAAATCAACCCTCATATGTCTTCCTATGTTCCCATATTTGAGAAGG
ATAGGTATTCTGGAGAAAATGGAGACAATTTTAACAGGACTCCAGCTTCATCATCAGAAATGGATGATGG
ACCTTCTCGAAGAGATCATTTCATGAAAAGTGGATTTGCCTCTGGGCGGAATTTTGGAAACAGAGATGCT
GGTGAGTGTAATAAGCGAGATAATACATCCACAATGGGTGGTTTTGGAGTTGGAAAGAGTTTTGGAAACA
GAGGTTTTTCAAACAGCAGGTTTGAAGATGGTGATAGCTCTGGTTTCTGGAGAGGCTATCGAGATGGAAA
TAATTCAGAAGCTTCAGGGCCATACAGAAGAGGTGGAAGAGGTAGTTTCCGAGGTTGCCGTGGAGGATTT
GGTCTAGGAAGTCCAAATAATGACTTAGACCCAGACGAATGTATGCAGCGCACTGGTGGCCTTTTTGGTT
CTAGAAGACCAGTATTAAGTGGCACAGGTAATGGTGATACTTCTCAAAGCAGAAGTGGCAGTGGAAGTGA
ACGAGGTGGTTACAAAGGTTTAAATGAAGAAGTAATAACAGGCTCTGGAAAGAATTCTTGGAAGTCAGAA
GCAGAAGGAGGAGAAAGTAGTGATACTCAAGGACCAAAAGTGACCTACATACCCCCTCCTCCACCTGAGG
ATGAGGACTCCATCTTTGCACATTATCAGACAGGCATAAACTTCGACAAATACGACACTATTCTTGTGGA
AGTGTCTGGACATGATGCACCACCAGCAATTCTGACTTTTGAAGAAGCTAATCTCTGTCAGACACTGAAT
AACAACATTGCTAAAGCTGGTTATACTAAGCTTACTCCTGTGCAAAAATACAGTATTCCTATCATACTTG
CAGGACGAGATTTGATGGCTTGCGCTCAAACAGGGTCTGGGAAGACTGCGGCTTTTCTCCTACCAATTTT
GGCTCATATGATGCATGATGGAATAACTGCCAGTCGTTTTAAAGAGTTGCAGGAACCAGAGTGTATTATT
GTAGCACCAACTCGAGAATTGGTCAACCAGATTTATTTGGAAGCCAGAAAATTTTCTTTTGGGACTTGTG
TAAGAGCTGTTGTTATATATGGGGGAACCCAGCTGGGACATTCAATTCGACAAATAGTACAAGGCTGTAA
TATATTATGTGCTACTCCTGGAAGACTGATGGATATCATAGGCAAAGAAAAGATTGGTCTCAAACAGATC
AAATACTTAGTTTTGGATGAAGCTGATCGCATGTTGGATATGGGTTTTGGTCCAGAAATGAAGAAGTTAA
TTTCTTGCCCAGGAATGCCATCAAAGGAACAGCGCCAAACCCTTATGTTCAGTGCAACTTTTCCAGAGGA
AATTCAAAGGTTGGCTGCAGAGTTTTTAAAGTCAAATTATCTGTTTGTTGCTGTTGGACAAGTGGGTGGA
GCATGTAGAGATGTTCAGCAGACCGTTCTCCAAGTTGGCCAGTTCTCAAAAAGAGAAAAGCTCGTTGAAA
TTCTGCGAAACATAGGGGATGAAAGAACTATGGTCTTTGTTGAAACTAAGAAAAAAGCAGATTTTATTGC
AACTTTTCTTTGTCAAGAAAAAATATCAACTACAAGTATTCATGGTGATCGGGAACAGAGAGAGCGGGAG
CAAGCTCTTGGAGATTTTCGCTTTGGAAAGTGCCCAGTTCTTGTTGCTACTTCAGTAGCTGCCAGAGGGC
TGGATATTGAAAATGTGCAACATGTTATCAATTTTGATCTTCCTTCTACCATTGATGAATATGTTCATCG
AATTGGGCGTACTGGTCGTTGTGGGAATACTGGCAGAGCAATTTCCTTTTTTGATCTTGAATCGGATAAC
CATTTAGCACAGCCTCTAGTAAAAGTATTGACAGATGCTCAACAGGATGTTCCTGCATGGTTGGAAGAAA
TTGCCTTTAGTACATACATTCCTGGCTTCAGTGGTAGTACAAGAGGAAACGTGTTTGCATCAGTTGATAC
CAGAAAGGGCAAGAGCACTTTGAACACAGCTGGGTTTTCTTCTTCACAAGCTCCCAATCCAGTAGATGAT
GAGTCATGGGATTAA

Translation (704 aa):
MGDEDWEAEINPHMSSYVPIFEKDRYSGENGDNFNRTPASSSEMDDGPSRRDHFMKSGFASGRNFGNRDA
GECNKRDNTSTMGGFGVGKSFGNRGFSNSRFEDGDSSGFWRGYRDGNNSEASGPYRRGGRGSFRGCRGGF
GLGSPNNDLDPDECMQRTGGLFGSRRPVLSGTGNGDTSQSRSGSGSERGGYKGLNEEVITGSGKNSWKSE
AEGGESSDTQGPKVTYIPPPPPEDEDSIFAHYQTGINFDKYDTILVEVSGHDAPPAILTFEEANLCQTLN
NNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECII
VAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQI
KYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGG
ACRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQRERE
QALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDN
HLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRKGKSTLNTAGFSSSQAPNPVDD
ESWD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH