NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, December 17, 2024, starting at 8:00 a.m. EST for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55104.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55104.2 Public Homo sapiens 7 SUGCT 24 110 108 CCDS HistoryNCBI Gene:79783Re-query CCDS DB by CCDS ID:55104.2Re-query CCDS DB by GeneID:79783See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 55104.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000628514.3 ENSP00000486291.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000628514.3Link to Ensembl Protein Viewer:ENSP00000486291.2Re-query CCDS DB by Nucleotide ID:ENST00000628514Re-query CCDS DB by Protein ID:ENSP00000486291
Original member Current member NCBI NM_001193311.2 NP_001180240.2 Accepted alive Link to Nucleotide Sequence:NM_001193311.2Link to Protein Sequence:NP_001180240.2Re-query CCDS DB by Nucleotide ID:NM_001193311Re-query CCDS DB by Protein ID:NP_001180240Link to BLAST:NP_001180240.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180240.2 464 Q9HAC7-3 464 100% 0 0

Chromosomal Locations for CCDS 55104.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 40135021 40135120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40180947 40180998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40181955 40182028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40188495 40188580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40189544 40189594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40194940 40195060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40237635 40237726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40274513 40274656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40316760 40316855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40449287 40449358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40459101 40459198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40496284 40496386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40684056 40684133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40749434 40749497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40860316 40860479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGCTGGCGACGCTGGCGAGGGTGGCAGCTCTGCGCAGAACCTGCCTCTTCTCCGGCCGGGGCGGCGGGA
GGGGGCTGTGGACTGGCCGCCCGCAGTCAGATATGAACAATATAAAGCCATTGGAAGGGGTAAAAATTCT
GGATCTAACAAGAGTCCTGGCGGGACCTTTTGCTACTATGAATTTAGGAGATCTTGGAGCAGAAGTTATA
AAAGTGGAGAGACCAGGAGCTGGTGATGATACACGAACTTGGGGGCCACCTTTTGTTGGGACAGAAAGTA
CATATTATCTCAGTGTTAACCGAAATAAAAAAAGTATTGCTGTTAATATCAAGGATCCAAAAGGGGTGAA
AATCATCAAAGAGCTTGCAGCTGTTTGTGATGTGTTTGTGGAAAACTATGTCCCTGGCAAACTGTCTGCA
ATGGGCCTGGGATATGAAGATATAGACGAGATTGCTCCTCACATCATCTATTGTTCCATCACAGGGTATG
GTCAGACAGGTCCAATTTCTCAGCGAGCTGGTTATGATGCTGTTGCCTCGGCTGTTTCTGGTCTGATGCA
CATCACAGGGCCTGAGAATGGAGATCCAGTTCGCCCAGGAGTAGCTATGACTGATCTTGCCACTGGCCTG
TATGCATATGGAGCTATTATGGCTGGATTGATACAAAAATACAAAACTGGGAAAGGACTGTTCATTGATT
GTAACCTACTGTCATCCCAGGTGGCGTGTTTGTCTCACATAGCTGCAAATTATCTTATTGGTCAAAAGGA
AGCAAAACGTTGGGGTACAGCTCATGGCAGTATCGTTCCTTACCAGGCTTTTAAAACCAAGGATGGCTAT
ATTGTAGTTGGAGCAGGAAATAACCAGCAGTTTGCCACCGTCTGCAAGATCTTGGATTTGCCTGAGTTGA
TTGATAATTCCAAGTATAAAACTAACCACCTTCGGGTACACAATAGAAAAGAGCTTATTAAAATATTATC
TGAACGGTTTGAAGAAGAACTGACCAGCAAGTGGTTATATCTTTTTGAAGGCAGTGGAGTCCCGTATGGC
CCAATCAACAACATGAAGAATGTATTTGCAGAACCTCAGAACGCTGTCTCTGGCTTCCAAAGCCTGCTGC
ATTCCTTGGCCCATGGCCCCTTCCTTCATCTTCAAGGATCAGCAAGGGTATTACACAATGGCCTCGTTAT
GGAGATGGAGCATCCAACTGTGGGGAAGATTTCCGTCCCAGGCCCAGCTGTGAGATACAGTAAGTTCAAG
ATGTCAGAGGCCAGGCCGCCCCCGCTGCTCGGGCAGCACACAACGCACATCCTGAAGGAGGTCCTGAGAT
ACGATGACAGGGCCATCGGGGAGCTGCTCAGCGCTGGAGTGGTGGACCAACATGAAACTCACTGA

Translation (464 aa):
MLATLARVAALRRTCLFSGRGGGRGLWTGRPQSDMNNIKPLEGVKILDLTRVLAGPFATMNLGDLGAEVI
KVERPGAGDDTRTWGPPFVGTESTYYLSVNRNKKSIAVNIKDPKGVKIIKELAAVCDVFVENYVPGKLSA
MGLGYEDIDEIAPHIIYCSITGYGQTGPISQRAGYDAVASAVSGLMHITGPENGDPVRPGVAMTDLATGL
YAYGAIMAGLIQKYKTGKGLFIDCNLLSSQVACLSHIAANYLIGQKEAKRWGTAHGSIVPYQAFKTKDGY
IVVGAGNNQQFATVCKILDLPELIDNSKYKTNHLRVHNRKELIKILSERFEEELTSKWLYLFEGSGVPYG
PINNMKNVFAEPQNAVSGFQSLLHSLAHGPFLHLQGSARVLHNGLVMEMEHPTVGKISVPGPAVRYSKFK
MSEARPPPLLGQHTTHILKEVLRYDDRAIGELLSAGVVDQHETH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH