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Report for CCDS55242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55242.1 Public Homo sapiens 8 SLCO5A1 24 110 108 CCDS HistoryNCBI Gene:81796Re-query CCDS DB by CCDS ID:55242.1Re-query CCDS DB by GeneID:81796See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55242.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000530307.1 ENSP00000431611.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000530307.1Link to Ensembl Protein Viewer:ENSP00000431611.1Re-query CCDS DB by Nucleotide ID:ENST00000530307Re-query CCDS DB by Protein ID:ENSP00000431611
Original member Current member NCBI NM_001146009.1 NP_001139481.1 Accepted alive Link to Nucleotide Sequence:NM_001146009.1Link to Protein Sequence:NP_001139481.1Re-query CCDS DB by Nucleotide ID:NM_001146009Re-query CCDS DB by Protein ID:NP_001139481Link to BLAST:NP_001139481.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139481.1 793 Q9H2Y9-2 793 100% 0 0

Chromosomal Locations for CCDS 55242.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 69672869 69673326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69676609 69676673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69679378 69679619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69682184 69682343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69705031 69705229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69755424 69755641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69761743 69761875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69831767 69832673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2382 nt):
ATGGACGAAGGCACTGGACTGCAGCCCGGGGCGGGAGAGCAGCTGGAGGCGCCGGCCACTGCAGAAGCTG
TCCAAGAGAGGTGCGAGCCGGAGACCCTCAGGTCTAAGAGTTTACCGGTCCTCAGCAGCGCCTCCTGCCG
GCCAAGCCTCAGTCCCACTAGTGGAGACGCCAACCCGGCCTTTGGCTGTGTGGATTCTTCGGGCCACCAG
GAGTTGAAGCAAGGCCCGAACCCGTTGGCCCCCAGTCCCTCTGCCCCGTCCACTTCGGCGGGGCTCGGGG
ACTGTAACCACAGGGTGGACCTCAGCAAAACCTTCTCGGTGTCCTCCGCCTTGGCCATGCTCCAGGAGAG
AAGGTGCCTCTACGTGGTCCTCACGGATTCCCGTTGCTTCCTGGTGTGCATGTGCTTTCTGACCTTCATC
CAGGCGTTAATGGTCTCTGGGTACCTGAGCAGCGTAATTACCACCATTGAAAGGCGCTACAGTCTGAAGA
GTTCCGAGTCGGGGCTGCTGGTCAGCTGCTTTGACATCGGGAACCTGGTGGTGGTGGTGTTCGTCAGCTA
CTTCGGCGGCCGGGGTCGGCGGCCCCTGTGGCTGGCCGTGGGTGGACTCCTCATCGCCTTCGGGGCAGCC
CTCTTCGCCTTACCTCACTTCATCTCGCCCCCCTACCAGATCCAAGAGTTGAACGCCTCGGCCCCCAACG
ACGGCCTGTGTCAGGGTGGCAACTCCACCGCCACTTTGGAGCCTCCGGCCTGTCCGAAGGACTCGGGAGG
AAATAATCACTGGGTCTACGTGGCTTTATTCATTTGCGCGCAGATTCTCATTGGAATGGGCTCCACACCT
ATTTATACCCTGGGACCAACCTACTTAGATGACAATGTCAAGAAAGAAAACTCCTCCTTGTACCTAGCCA
TCATGTATGTCATGGGAGCACTTGGCCCTGCAGTGGGATATTTATTAGGTGGACTTCTTATTGGTTTTTA
TGTTGATCCCAGAAATCCTGTTCACCTTGACCAGAATGACCCTCGTTTCATTGGAAACTGGTGGAGTGGA
TTCCTCCTTTGTGCCATTGCAATGTTTCTTGTGATATTCCCAATGTTTACTTTCCCAAAAAAGCTTCCAC
CTCGACACAAGAAAAAGAAAAAGAAAAAATTTTCTGTTGATGCTGTTAGTGATGACGATGTTCTGAAGGA
GAAATCAAACAACAGTGAACAAGCGGACAAAAAAGTTTCTTCGATGGGATTTGGAAAGGATGTCAGAGGG
GTTATTATCGTCCCCAGTGCTGGTGTTGGTATTGTCCTCGGAGGCTACATTATAAAAAAATTGAAACTTG
GTGCCAGAGAATCTGCAAAACTAGCAATGATCTGCAGTGGTGTGTCTTTACTATGTTTTTCAACCCTATT
TATTGTTGGATGTGAAAGCATTAATCTAGGGGGCATAAACATCCCTTATACAACAGGACCTTCTCTCACC
ATGCCCCATAGGAATCTGACAGGAAGCTGCAACGTTAATTGTGGTTGTAAAATACACGAGTATGAGCCAG
TCTGTGGATCAGATGGAATTACATACTTTAACCCTTGTCTGGCTGGCTGTGTTAATAGTGGTAATCTTAG
CACTGGGATACGGAATTATACAGAATGCACCTGTGTCCAAAGTCGCCAAGTGATCACTCCACCCACCGTG
GGACAGCGAAGTCAGCTCCGTGTGGTTATTGTCAAGACTTATCTCAATGAGAACGGCTATGCTGTGTCTG
GGAAATGTAAACGGACCTGCAATACTCTTATCCCATTCTTAGTTTTTCTTTTCATAGTCACCTTCATCAC
AGCATGTGCCCAACCATCAGCTATCATAGTAACACTCAGGTCCGTAGAAGATGAGGAGAGACCTTTTGCA
CTGGGAATGCAGTTTGTTTTGTTGCGAACACTTGCATACATTCCTACTCCAATCTACTTTGGAGCAGTCA
TTGACACCACCTGCATGCTCTGGCAACAGGAATGTGGTGTGCAGGGTTCTTGCTGGGAGTACAACGTGAC
GTCGTTTCGTTTTGTGTATTTTGGTTTGGCTGCCGGCCTCAAATTCGTTGGGTTTATTTTTATTTTTCTG
GCCTGGTACTCCATAAAATACAAGGAGGATGGACTGCAGAGGCGGAGGCAGAGAGAATTTCCCCTGAGCA
CCGTGAGTGAGAGAGTGGGACACCCCGACAATGCCCGGACTAGATCTTGCCCAGCTTTCAGCACCCAGGG
AGAATTCCACGAAGAGACTGGCCTGCAAAAAGGGATCCAGTGCGCAGCACAGACCTACCCGGGGCCCTTC
CCAGAAGCAATAAGTTCCTCTGCGGACCCGGGGCTGGAAGAGAGCCCCGCTGCCTTGGAGCCGCCCTCCT
GA

Translation (793 aa):
MDEGTGLQPGAGEQLEAPATAEAVQERCEPETLRSKSLPVLSSASCRPSLSPTSGDANPAFGCVDSSGHQ
ELKQGPNPLAPSPSAPSTSAGLGDCNHRVDLSKTFSVSSALAMLQERRCLYVVLTDSRCFLVCMCFLTFI
QALMVSGYLSSVITTIERRYSLKSSESGLLVSCFDIGNLVVVVFVSYFGGRGRRPLWLAVGGLLIAFGAA
LFALPHFISPPYQIQELNASAPNDGLCQGGNSTATLEPPACPKDSGGNNHWVYVALFICAQILIGMGSTP
IYTLGPTYLDDNVKKENSSLYLAIMYVMGALGPAVGYLLGGLLIGFYVDPRNPVHLDQNDPRFIGNWWSG
FLLCAIAMFLVIFPMFTFPKKLPPRHKKKKKKKFSVDAVSDDDVLKEKSNNSEQADKKVSSMGFGKDVRG
VIIVPSAGVGIVLGGYIIKKLKLGARESAKLAMICSGVSLLCFSTLFIVGCESINLGGINIPYTTGPSLT
MPHRNLTGSCNVNCGCKIHEYEPVCGSDGITYFNPCLAGCVNSGNLSTGIRNYTECTCVQSRQVITPPTV
GQRSQLRVVIVKTYLNENGYAVSGKCKRTCNTLIPFLVFLFIVTFITACAQPSAIIVTLRSVEDEERPFA
LGMQFVLLRTLAYIPTPIYFGAVIDTTCMLWQQECGVQGSCWEYNVTSFRFVYFGLAAGLKFVGFIFIFL
AWYSIKYKEDGLQRRRQREFPLSTVSERVGHPDNARTRSCPAFSTQGEFHEETGLQKGIQCAAQTYPGPF
PEAISSSADPGLEESPAALEPPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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