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Report for CCDS5529.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5529.1 Public Homo sapiens 7 VKORC1L1 24 110 108 CCDS HistoryNCBI Gene:154807Re-query CCDS DB by CCDS ID:5529.1Re-query CCDS DB by GeneID:154807See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 5529.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360768.5 ENSP00000353998.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360768.5Link to Ensembl Protein Viewer:ENSP00000353998.2Re-query CCDS DB by Nucleotide ID:ENST00000360768Re-query CCDS DB by Protein ID:ENSP00000353998
Original member Current member EBI ENST00000648179.1 ENSP00000497394.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648179.1Link to Ensembl Protein Viewer:ENSP00000497394.1Re-query CCDS DB by Nucleotide ID:ENST00000648179Re-query CCDS DB by Protein ID:ENSP00000497394
Original member Current member NCBI NM_173517.6 NP_775788.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173517.6Link to Protein Sequence:NP_775788.2Re-query CCDS DB by Nucleotide ID:NM_173517Re-query CCDS DB by Protein ID:NP_775788Link to BLAST:NP_775788.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775788.2 176 Q8N0U8-1 176 100% 0 0

Chromosomal Locations for CCDS 5529.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 65873372 65873565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65948671 65948780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65954074 65954300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGGCGGCTCCCGTCCTGCTAAGAGTGTCGGTGCCGCGGTGGGAGCGGGTGGCCCGGTATGCAGTGTGCG
CTGCCGGAATCCTGCTCTCCATCTACGCCTACCACGTGGAGCGGGAGAAGGAGCGGGACCCCGAGCACCG
GGCCCTCTGCGACCTGGGGCCCTGGGTGAAGTGCTCCGCCGCCCTTGCCTCCAGATGGGGTCGAGGATTT
GGTCTTTTGGGTTCCATTTTTGGAAAGGATGGTGTATTAAACCAGCCAAACAGTGTCTTTGGACTTATAT
TTTATATACTACAGTTATTACTTGGCATGACAGCAAGCGCTGTGGCGGCTTTGATCCTCATGACGTCCTC
CATCATGTCGGTCGTGGGGTCCCTGTACCTGGCCTACATTCTGTACTTTGTGCTGAAGGAGTTCTGCATC
ATCTGCATCGTCACGTACGTGCTGAACTTCCTTCTTCTCATTATCAACTACAAACGACTAGTTTACTTGA
ACGAGGCCTGGAAGCGGCAGCTGCAACCCAAGCAGGACTGA

Translation (176 aa):
MAAPVLLRVSVPRWERVARYAVCAAGILLSIYAYHVEREKERDPEHRALCDLGPWVKCSAALASRWGRGF
GLLGSIFGKDGVLNQPNSVFGLIFYILQLLLGMTASAVAALILMTSSIMSVVGSLYLAYILYFVLKEFCI
ICIVTYVLNFLLLIINYKRLVYLNEAWKRQLQPKQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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