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Report for CCDS55346.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55346.1 Public Homo sapiens 9 RALGPS1 24 110 108 CCDS HistoryNCBI Gene:9649Re-query CCDS DB by CCDS ID:55346.1Re-query CCDS DB by GeneID:9649See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55346.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373434.5 ENSP00000362533.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373434.5Link to Ensembl Protein Viewer:ENSP00000362533.1Re-query CCDS DB by Nucleotide ID:ENST00000373434Re-query CCDS DB by Protein ID:ENSP00000362533
Original member Current member NCBI NM_001190728.1 NP_001177657.1 Accepted alive Link to Nucleotide Sequence:NM_001190728.1Link to Protein Sequence:NP_001177657.1Re-query CCDS DB by Nucleotide ID:NM_001190728Re-query CCDS DB by Protein ID:NP_001177657Link to BLAST:NP_001177657.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177657.1 529 Q5JS13-2 529 100% 0 0

Chromosomal Locations for CCDS 55346.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 126962290 126962346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 126965844 126965951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 126977695 126977745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127034431 127034514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127050043 127050132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127052847 127052939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127069230 127069356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127166069 127166206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127168679 127168772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127174715 127174782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127195091 127195217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127210695 127210778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127212131 127212236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127212627 127212719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127212968 127213049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127214751 127214842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127216906 127217001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGTACAAGAGGAATGGTCTGATGGCTAGCGTGTTGGTCACCTCTGCCACTCCACAGGGCAGCAGCAGCT
CGGACTCTCTGGAGGGCCAGAGCTGCGACTATGCCAGCAAGAGCTATGATGCCGTTGTCTTCGATGTCTT
GAAAGTGACCCCAGAGGAGTTTGCTAGCCAGATTACATTAATGGATATACCTGTGTTTAAAGCTATCCAG
CCGGAGGAACTAGCCAGCTGTGGATGGAGTAAGAAGGAGAAACACAGTCTTGCCCCTAACGTTGTGGCCT
TTACCCGGAGGTTTAACCAGGTCAGTTTTTGGGTTGTACGAGAAATTCTAACAGCACAGACTTTAAAAAT
AAGGGCAGAAATCCTCAGCCATTTTGTGAAAATAGCCAAGAAACTTCTAGAACTCAACAACCTTCATTCT
CTCATGTCTGTGGTATCAGCATTACAAAGTGCTCCCATCTTCAGGCTGACAAAAACCTGGGCTCTTTTAA
ATCGAAAAGACAAGACTACCTTTGAGAAATTGGACTACCTGATGTCGAAAGAAGATAATTACAAGCGGAC
ACGGGAATATATCCGAAGCCTGAAGATGGTTCCAAGTATTCCCTATCTAGGAATCTATCTTCTGGATTTA
ATCTACATTGATTCTGCATATCCTGCCTCAGGCAGTATCATGGAAAATGAACAAAGATCCAATCAGATGA
ACAATATTCTTCGAATAATTGCTGATTTACAAGTTTCCTGCAGCTATGATCACCTCACCACCCTGCCCCA
TGTGCAGAAGTACCTGAAGTCCGTACGCTACATTGAAGAGCTCCAGAAGTTTGTGGAAGACGACAACTAC
AAACTGTCGCTCAGAATCGAACCAGGAAGCAGCTCTCCAAGACTAGTCTCTTCCAAGGAAGATCTTGCAG
GTCCCTCTGCTGGCTCCGGTTCTGCGAGGTTCAGCCGGAGGCCCACCTGTCCTGACACATCTGTTGCTGG
CAGCCTCCCCACACCTCCAGTCCCCAGACACAGGAAGAGCCACAGCCTAGGCAACAACAGGGGACGTCTC
TATGCCACCCTGGGGCCCAACTGGCGGGTTCCAGTTAGGAATTCTCCCAGAACCCGGAGCTGTGTCTACA
GCCCCACCGGCCCGTGCATCTGTTCTCTGGGGAACTCCGCAGCTGTGCCCACCATGGAGGGGCCTCTGAG
AAGAAAAACCCTGCTCAAGGAAGGGCGGAAGCCTGCGCTGTCCTCGTGGACCAGGTACTGGGTCATACTC
TCAGGATCCACCCTCCTGTACTACGGAGCCAAGTCCTTGCGGGGCACAGACAGAAAACACGTTTCCATCG
TGGGCTGGATGGTGCAGCTGCCCGATGACCCCGAGCACCCAGATATCTTCCAGCTGAACAACCCTGACAA
AGGCAATGTTTACAAGTTTCAGACTGGTTCCCGATTTCATGCAATACTGTGGCACAAGCATTTGGATGAT
GCATGTAAAAGCAACAGGCCTCAGGAAGCCGGAGCAGCTCCAGGTCCAACAGGAACTGACAGCCACGAGG
TGGACCACCTGGAGGGCGGTGCGGGGAAGGAGGCAGGGCCCTGTGCCTGA

Translation (529 aa):
MYKRNGLMASVLVTSATPQGSSSSDSLEGQSCDYASKSYDAVVFDVLKVTPEEFASQITLMDIPVFKAIQ
PEELASCGWSKKEKHSLAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHS
LMSVVSALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPYLGIYLLDL
IYIDSAYPASGSIMENEQRSNQMNNILRIIADLQVSCSYDHLTTLPHVQKYLKSVRYIEELQKFVEDDNY
KLSLRIEPGSSSPRLVSSKEDLAGPSAGSGSARFSRRPTCPDTSVAGSLPTPPVPRHRKSHSLGNNRGRL
YATLGPNWRVPVRNSPRTRSCVYSPTGPCICSLGNSAAVPTMEGPLRRKTLLKEGRKPALSSWTRYWVIL
SGSTLLYYGAKSLRGTDRKHVSIVGWMVQLPDDPEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDD
ACKSNRPQEAGAAPGPTGTDSHEVDHLEGGAGKEAGPCA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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