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Report for CCDS55678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55678.1 Public Homo sapiens 1 LEMD1 24 110 108 CCDS HistoryNCBI Gene:93273Re-query CCDS DB by CCDS ID:55678.1Re-query CCDS DB by GeneID:93273See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55678.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367152.5 ENSP00000356120.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367152.5Link to Ensembl Protein Viewer:ENSP00000356120.1Re-query CCDS DB by Nucleotide ID:ENST00000367152Re-query CCDS DB by Protein ID:ENSP00000356120
Original member Current member NCBI NM_001199051.2 NP_001185980.1 Accepted alive Link to Nucleotide Sequence:NM_001199051.2Link to Protein Sequence:NP_001185980.1Re-query CCDS DB by Nucleotide ID:NM_001199051Re-query CCDS DB by Protein ID:NP_001185980Link to BLAST:NP_001185980.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185980.1 140 Q68G75-3 140 100% 0 0

Chromosomal Locations for CCDS 55678.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 205381658 205381856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205384288 205384364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205416232 205416296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205420455 205420536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGGTGGATGTGAAGTGTCTGAGTGACTGTAAATTGCAGAACCAACTTGAGAAGCTTGGATTTTCACCTG
GCCCAATACTACAGCTTAATATCATTTTGCAAGGAAATATCATACTCTCAACAGAAAAAAGCAAGAAACT
CAAAAAATGGCCTGAGGCTTCCACCACTAAACGCAAAGCTGTAGATACCTATTGCTTGGATTATAAGCCT
TCCAAGGGAAGAAGGTGGGCTGCAAGAGCACCAAGCACCAGAATCACATATGGGACTATCACCAAAGAGA
GAGACTACTGCGCGGAAGACCAGACTATCGAGAGCTGGAGAGAAGAAGGTTTCCCAGTGGGCTTGAAGCT
TGCTGTGCTTGGTATTTTCATCATTGTGGTGTTTGTCTACCTGACTGTGGAAAATAAGTCGCTGTTTGGT
TAA

Translation (140 aa):
MVDVKCLSDCKLQNQLEKLGFSPGPILQLNIILQGNIILSTEKSKKLKKWPEASTTKRKAVDTYCLDYKP
SKGRRWAARAPSTRITYGTITKERDYCAEDQTIESWREEGFPVGLKLAVLGIFIIVVFVYLTVENKSLFG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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